bpark-research

bpark-research's Stars

• gorpipe/gor

  GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

  Language:Java4013

• jacklandrin/OnlySwitch

  ⚙️ All-in-One menu bar app, hide 💻MacBook Pro's notch, dark mode, AirPods, Shortcuts

  Language:Swift4k189

• wxWidgets/wxWidgets

  Cross-Platform C++ GUI Library

  Language:C++6.1k1.8k

• openbabel/openbabel

  Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

  Language:C++1.1k414

• RosettaCommons/rosetta

  The Rosetta Bio-macromolecule modeling package.

  Language:C++15563

• Kimchangheon/Moleculer-Image-to-SMILES

  Language:Jupyter Notebook51

• Kohulan/DECIMER-Image-to-SMILES

  The repository contains the network and the related scripts for encoder-decoder based Chemical Image Recognition

  Language:Python8324

• steineggerlab/colabfold-protocol

  ColabFold protocol

  Language:Jupyter Notebook428

• marcotcr/lime

  Lime: Explaining the predictions of any machine learning classifier

  Language:JavaScript11.6k1.8k

• yanghojin777/IRAK4IC50

  Language:Jupyter Notebook1

• aws-samples/amazon-sagemaker-with-nvidia-bionemo

  Language:Jupyter Notebook112

• GoogleCloudPlatform/vertex-ai-alphafold-inference-pipeline

  This repository compiles prescriptive guidance and code samples demonstrating how to operationalize AlphaFold batch inference using Vertex AI Pipelines.

  Language:Python6428

• broadinstitute/genepy

  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

  Language:Python205

• broadinstitute/depmap_omics

  What you need to process the Quarterly DepMap-Omics releases from Terra

  Language:HTML11022

• patrickbryant1/Cfold

  Structure prediction of alternative protein conformations

  Language:Jupyter Notebook716

• GenomicsDB/GenomicsDB

  High performance data storage for importing, querying and transforming variants.

  Language:C++9418

• mlin/spVCF

  Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently

  Language:C++581

• Ultimagen/healthomics-workflows

  UltimaGenomics repository for workflows compatible with AWS HealthOmics

  Language:WDL113

• aws-samples/sagemaker-studio-emr

  Language:Jupyter Notebook3225

• aws/amazon-sagemaker-examples

  Example 📓 Jupyter notebooks that demonstrate how to build, train, and deploy machine learning models using 🧠 Amazon SageMaker.

  Language:Jupyter Notebook10.1k6.8k

• mosaicml/composer

  Supercharge Your Model Training

  Language:Python5.2k418

• openai/human-eval

  Code for the paper "Evaluating Large Language Models Trained on Code"

  Language:Python2.4k340

• konlpy/konlpy

  Python package for Korean natural language processing.

  Language:Python1.4k333

• srijitseal/DICTrank

  Predictor for DICTrank

  Language:Jupyter Notebook31

• peremartra/Large-Language-Model-Notebooks-Course

  Practical course about Large Language Models.

  Language:Jupyter Notebook1.2k324

• nathanieljevans/GSNN

  Graph Structured Neural Networks

  Language:Jupyter Notebook4

• mit-han-lab/torchquantum

  A PyTorch-based framework for Quantum Classical Simulation, Quantum Machine Learning, Quantum Neural Networks, Parameterized Quantum Circuits with support for easy deployments on real quantum computers.

  Language:Jupyter Notebook1.3k200

• mattragoza/LiGAN

  Deep generative models of 3D grids for structure-based drug discovery

  Language:Python22343

• jk1333/summit24

  Language:Python11

• delta-io/delta-sharing

  An open protocol for secure data sharing

  Language:Scala764171