bpucker
Professor at TU Braunschweig with research interests in plant genomics and specialized metabolism. Details: https://www.tu-braunschweig.de/en/ifp/pbb
Plant Biotechnology and Bioinformatics, Institute of Plant Biology, TU BraunschweigGermany
Pinned Repositories
AppliedGenomeResearch
course about NGS data processing: genomics and transcriptomics
APPLS
Applied Python Programming for Life Scientists
KIPEs
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
MGSE
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
MYB_annotator
This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.
Overview
Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.
PBBtools
collection of mini tools for the BioinfToolServer
PythonTUBS
Python introduction for life scientists
RNA-Seq_analysis
scripts for RNA-Seq analysis
teaching
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
bpucker's Repositories
bpucker/teaching
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
bpucker/PythonTUBS
Python introduction for life scientists
bpucker/MGSE
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
bpucker/MYB_annotator
This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.
bpucker/FlavonoidFriday
Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation, and repelling herbivores.This repository provides additional background to the #FlavonoidFriday tweets
bpucker/MybMonday
MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets
bpucker/KIPEs
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
bpucker/script_collection
Collection of scripts to solve small bioinformatic challenges.
bpucker/NAVIP
Neighborhood-Aware Variant Impact Predictor
bpucker/ToolOverview
summary of available plant genomics tools
bpucker/bHLH_annotator
automatic annotation of bHLH gene family in plants
bpucker/Boas_Pucker
Homepage of Boas Pucker listing publications and professional activities
bpucker/CHS
CHS gene structure prediction analysis
bpucker/GenomeAssembly
collection of tools for the analysis and cleaning of genome assemblies
bpucker/variant_calling
variant calling and processing
bpucker/AppliedPlantTranscriptomics
Collection of materials belonging to the Applied Plant Transcriptomics course
bpucker/RepeatsInBeets
phylogenetic generalized least square (PGLS) regressions for repeats and genome sizes in beets
bpucker/yam_scripts
all my yam scripts
bpucker/CaryoAnthoBlock
investigation of expression levels of anthocyanin biosynthesis genes in the Caryophyllales
bpucker/CoExp
Co-Expression analysis tool
bpucker/lycocyc
collection of scripts for lycopene cyclase analysis
bpucker/Overview
Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.
bpucker/PBBtools
collection of mini tools for the BioinfToolServer
bpucker/phyl_constr
construction of species tree based on large sequence data sets
bpucker/RNAseqQualCheck
script to assess the quality of RNAseq data sets
bpucker/ApiaceaeFNS1
FNS I evolution in Apiaceae
bpucker/beetresmabs
scripts related to analyses performed for beetresmabs
bpucker/codi
color differences between plant species
bpucker/DFR_vs_FLS
competing branches of the flavonoid biosynthesis
bpucker/vici
scripts associated with the Victoria cruziana study