Pinned Repositories
braingeneerspy
Python package for Braingeneers data loading, analysis, and IoT.
experiment
Software infrastructure for allocating and executing organoid experiments
optogenetic-feedback-loop
Optogenetic feedback loop for shaping the behavior of cortical organoids
organoid-simulation
Models for simulating neural network behavior of organoids
Picroscope-firmwares
picroscope-supplement
piphys
Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments
SIMS
SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
statdepth
Implementation of depth calculation methods for genomics data
wetai
Python package for the wetAI web platform
braingeneers's Repositories
braingeneers/braingeneerspy
Python package for Braingeneers data loading, analysis, and IoT.
braingeneers/piphys
Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments
braingeneers/SIMS
SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
braingeneers/Picroscope-firmwares
braingeneers/wetai
Python package for the wetAI web platform
braingeneers/AndrewsGengVoitiukEtAl_SourceCode
Source Code for our MS "Optogenetic modulation of epileptiform activity in human brain tissue"
braingeneers/Braingeneers-Datahub
braingeneers/braingeneers-docker-images
Repository for braingeneers docker images
braingeneers/cellxgene-ingest
Download scRNASeq from CZ Cell x Gene Census upload to NRP S3 optimized for ML
braingeneers/IOT_Education_Lab_on_Chip_Paper
We wrote educational programs for remote IoT and local IoT outreach in Bolivia.
braingeneers/seruotchi-supplement
braingeneers/SpikeData
Testing a refactor of the SpikeData class and associated analysis out from braingeneerspy.
braingeneers/Sury_Analysis_Example
Analysis of post_Processed ephys data. Save in case we use it for the class.
braingeneers/WetAI_Docker
This code creates the docker container for the WetAI interface
braingeneers/mission_control
Contains the full stack of braingeneers services as well as start/stop procedures.
braingeneers/Protosequences2023
Analysis code for our manuscript "Protosequences in human cortical organoids model intrinsic states in the developing cortex"
braingeneers/Blob-Measuring-with-Computer-Vision
braingeneers/Braingeneers-Shadows-Database
braingeneers/images
Viewer for images generated by the picroscope
braingeneers/incuber
CO2 and temperature control system and adjacent stuff.
braingeneers/IOT_Education_Stem_Cell_Paper
Statistics done for Mo's IOT education paper
braingeneers/Maxwell_Scheduler
Contains code for integrating different devices into the Maxwell system through IoT. The Devices are controlled using the WetAI platform.
braingeneers/Optogenetic_Modulation_of_Epileptiform_Data
A repository for explaining the procedure for accessing data from an experiment.
braingeneers/Plotly-Device-Console
Console for viewing and interacting with devices in the Braingeneers shadows database
braingeneers/research-template
braingeneers/search
Prototype search engine for experiment object store
braingeneers/smart_open
Utils for streaming large files (S3, HDFS, gzip, bz2...)
braingeneers/test
braingeneers/things
Infrastructure to manage in lab linux endpoints collecting data and uploading to the cloud
braingeneers/valeskas-code