brianmanderson
Clinical Assistant Professor at University of North Carolina, Chapel Hill
UNC Radiation OncologyChapel Hill, NC
Pinned Repositories
AAPM_Summer_School_Workshop
This is a deformable registration code, adapted from the voxelmorph code available here: https://github.com/voxelmorph/voxelmorph
Anonymize_Dicom
A simple tool to anonymize DICOM files
Create_RT_From_Dicom_and_Mask
This is for the creation of a Dicom_RT structure using a template RT structure, the dicom images, and a mask
Cyclical_Learning_Rate
Code adapted from https://github.com/bckenstler/CLR
Dicom_Data_to_Numpy_Arrays
For parallel creation of RT structures into numpy arrays for deep learning training purposes
Dicom_RT_and_Images_to_Mask
Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images
DicomTemplateMakerCSharp
Intro_to_Raystation
small intro teaching some useful things for raystation along with basic code
RegisteringImages
Tools for registering images with Dicom Registration files
Segmentation_Evaluation_Tools
Tools for quantitative evaluation of prediction segmentations (Dice, Jaccard, volume similarity, false_negative, false_positive, mean, median, max, and std surface distances)
brianmanderson's Repositories
brianmanderson/Dicom_RT_and_Images_to_Mask
Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images
brianmanderson/RegisteringImages
Tools for registering images with Dicom Registration files
brianmanderson/DicomTemplateMakerCSharp
brianmanderson/Data_Generators
Data generators that I use
brianmanderson/Image_Processors_Module
Image processors for keras, predictive models, datasets, and example loaders
brianmanderson/PDF_To_JPG_CSharp
A program which runs through a provided list of file locations to convert pdfs to jpegs
brianmanderson/Resample_Class
brianmanderson/Prediction_Model_Class
My base class for letting the server predict from multiple models
brianmanderson/ApertureComplexity
Python 3.x port of the Eclipse ESAPI plug-in script used in the study : Predicting deliverability of volumetric-modulated arc therapy (VMAT) plans using aperture complexity analysis
brianmanderson/CV_and_Biosketch
brianmanderson/DataSearcher
Tool for searching through data generated by the InfoStructure tool
brianmanderson/DockerDevContainers
A set of docker dev containers for vs code
brianmanderson/EDWProfile
brianmanderson/ExportTools
Tools for exporting based on the RS InfoStructure
brianmanderson/GitHubAutoUpdater
brianmanderson/keras_deeplab_v3_plus
Keras implementation of Deeplab v3+ with pretrained weights
brianmanderson/PickleObjects
A base class for pickling and unpickling objects
brianmanderson/pynetdicom
A Python implementation of the DICOM networking protocol
brianmanderson/Raystation_DoseAccumulation
A script to create a deformable registration for dose accumulation
brianmanderson/Template_EquipmentTracking
Used for tracking the sterilization requirements of the brachy team
brianmanderson/tensorflow
An Open Source Machine Learning Framework for Everyone
brianmanderson/UID_Generator
A class to make unique ids in a generator
brianmanderson/UNC_BreakFrameOfReference
brianmanderson/UNC_CollisionProject
brianmanderson/UNC_Cutout
brianmanderson/UNC_DeleteBackupPlans
Repo designed to delete BACKUP_* plans, which are occupying a large amount of space
brianmanderson/UNC_RaystationTemplate
Base wrapper that is needed to start any UNC Raystation Project
brianmanderson/UNC_Research_Template
A general template for UNC Research Projects
brianmanderson/Unzip_Unlink_Csharp
An application built to break the inherent registration in MR images
brianmanderson/Visualizing_Model
A class for visualizing a model (kernel and activations)