brianmanderson

AAPM_Summer_School_Workshop

This is a deformable registration code, adapted from the voxelmorph code available here: https://github.com/voxelmorph/voxelmorph

Anonymize_Dicom

A simple tool to anonymize DICOM files

Create_RT_From_Dicom_and_Mask

This is for the creation of a Dicom_RT structure using a template RT structure, the dicom images, and a mask

Cyclical_Learning_Rate

Code adapted from https://github.com/bckenstler/CLR

Dicom_Data_to_Numpy_Arrays

For parallel creation of RT structures into numpy arrays for deep learning training purposes

Dicom_RT_and_Images_to_Mask

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

DicomTemplateMakerCSharp

Intro_to_Raystation

small intro teaching some useful things for raystation along with basic code

RegisteringImages

Tools for registering images with Dicom Registration files

Segmentation_Evaluation_Tools

Tools for quantitative evaluation of prediction segmentations (Dice, Jaccard, volume similarity, false_negative, false_positive, mean, median, max, and std surface distances)

brianmanderson/Copy-Shared-Google-to-Colab

This will let you copy over a folder from a shared link to your own work station in google colab

brianmanderson/AAPM_Summer_School_Court_Workshop

brianmanderson/icecream_images

brianmanderson/Teaching-Python-to-Matlab-Users

Files for teaching python to matlab users

brianmanderson/Labs

Container Orchestration Labs