Pinned Repositories
abanalysis
abcloud
Launch and manage cloud computing resources for antibody repertoire analysis
abtools
Analysis of antibody NGS data
clonify
nwalign3
updated version of nwalign with Python 3.X compatibility
abstar
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
abutils
antiref
AntiRef: reference clusters of human antibody sequences
grp-paper
Code and data used in The Great Repertoire Project
scab
briney's Repositories
briney/abtools
Analysis of antibody NGS data
briney/nwalign3
updated version of nwalign with Python 3.X compatibility
briney/abcloud
Launch and manage cloud computing resources for antibody repertoire analysis
briney/clonify
briney/clonify-python
briney/abx_tutorial_2019
briney/cvisb_workshop_2020
briney/AIRR-training
briney/antiberta
Public repository describing training and testing of AntiBERTa.
briney/baltic
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
briney/basespace-python-sdk
BaseSpace Python SDK
briney/brineylab-workspace
🛠 All-in-one web-based IDE specialized for machine learning and data science.
briney/clonify-scirep2016data
Sequence data for the Clonify publication (Briney et al., 2016)
briney/cocalc-docker
Docker setup for running CoCalc as downloadable software on your own computer
briney/conda
Specifying a conda environment with `environment.yml`
briney/DeepAb
Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
briney/dit
Python package for information theory.
briney/dkube-helm
Repository to host dkube helm charts
briney/docker-images
briney/imnet
imNet: a Sequence Network Construction Toolkit
briney/locuspocus
briney/mabtools
briney/ml-road
Machine Learning Resources, Practice and Research
briney/nextgen_agbc_paper
briney/opentrons_protocols
briney/research-group-web
a template for research group sites
briney/tutorials
briney/vaxtools
briney/VRam142.github.io
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
briney/VRC01gH-GT3