Pinned Repositories
blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
cs2star
gibberify
Gibberify is a simple gibberish generator that translates words from a real language to a pronounceable gibberish.
napari-label-interpolator
napari-molecule-reader
napari-properties-plotter
A napari plugin that automatically generates interactive plots based on layer properties.
stemia
Scripts and Tools for Electron Microscopy Image Analysis.
waretomo
Overengineered batch processing script for tomography data with Warp and aretomo.
napari
napari: a fast, interactive, multi-dimensional image viewer for python
brisvag's Repositories
brisvag/blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
brisvag/napari-label-interpolator
brisvag/stemia
Scripts and Tools for Electron Microscopy Image Analysis.
brisvag/cs2star
brisvag/starfile.vim
VIM syntax for STAR/CIF files.
brisvag/waretomo
Overengineered batch processing script for tomography data with Warp and aretomo.
brisvag/stir
Wrapper for a collection of tools to visualize Martini coarse-grained trajectories in PyMOL
brisvag/brisvag
brisvag/cellcanvas
A tool to support interactive machine learning for cryoET data
brisvag/cryohub
IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
brisvag/cryotypes
A super-simple data structure for particle poses from cryo-ET software
brisvag/dotfiles
brisvag/emscan
brisvag/extra-pydantic
brisvag/lui
Lemmy TUI.
brisvag/morphosamplers
A library for sampling image data along morphological objects such as splines and surfaces.
brisvag/napari
napari: a fast, interactive, multi-dimensional image viewer for python
brisvag/napari-animation
A napari plugin for making animations
brisvag/napari-cellular-automata
napari-cellular-automata
brisvag/napari-svg
A plugin for writing svg files from napari
brisvag/ohmyzsh
🙃 A delightful community-driven (with 2,100+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
brisvag/pyem
Python programs for electron microscopy
brisvag/pyrepo-cookiecutter
personal repo bootstrap
brisvag/rich
Rich is a Python library for rich text and beautiful formatting in the terminal.
brisvag/scipion-em-blik
Plugin to use Blik program within the Scipion framework
brisvag/starfile
relion STAR files as pandas DataFrames
brisvag/surforama
a tool for using surfaces to explore volumetric data in napari
brisvag/textual
Textual is a Rapid Application Development framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and (coming soon) a web browser!
brisvag/vispy
Main repository for Vispy
brisvag/warp