Pinned Repositories
blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
cs2star
gibberify
Gibberify is a simple gibberish generator that translates words from a real language to a pronounceable gibberish.
napari-label-interpolator
napari-molecule-reader
napari-properties-plotter
A napari plugin that automatically generates interactive plots based on layer properties.
stemia
Scripts and Tools for Electron Microscopy Image Analysis.
waretomo
Overengineered batch processing script for tomography data with Warp and aretomo.
napari
napari: a fast, interactive, multi-dimensional image viewer for python
brisvag's Repositories
brisvag/napari-properties-plotter
A napari plugin that automatically generates interactive plots based on layer properties.
brisvag/starfile.vim
VIM syntax for STAR/CIF files.
brisvag/napari-gruvbox
brisvag/napari-help
brisvag/.github
brisvag/Agents.jl
Agent-based modeling framework in Julia
brisvag/app-model
Generic application schema implemented in python.
brisvag/dscore
brisvag/in-n-out
Python dependency injection you can taste
brisvag/magicgui
build GUIs from python functions, using magic.
brisvag/mdocfile
SerialEM mdoc files in Python
brisvag/MetaGraphsNext.jl
This is an experimental, type-stable replacement for MetaGraphs
brisvag/napari-animation
A napari plugin for making animations
brisvag/napari-cellular-automata
napari-cellular-automata
brisvag/napari-console
A plugin that adds a console to napari
brisvag/napari-plugin-engine
A fork of pluggy - plugin management package
brisvag/napari-skimage-widgets
Autogenerated napari widgets for scikit-image functions.
brisvag/napari-spaces
brisvag/napari-svg
A plugin for writing svg files from napari
brisvag/napari-threedee
A 3D interactivity toolbox for napari
brisvag/napari_docs
Documentation for napari (other than API docs)
brisvag/npe2
brisvag/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
brisvag/pydantic
Data parsing and validation using Python type hints
brisvag/pydantic-generics
brisvag/relion
Image-processing software for cryo-electron microscopy
brisvag/setup-qt-libs
install libraries required to use qt on github action (does not install qt itself)
brisvag/teamtomo.github.io
A collaborative knowledge sharing platform for the cryo-ET community
brisvag/webknossos
A fully cloud- and browser-based 3D annotation tool for distributed large-scale data analysis in light- and electron-microscopy based Connectomics
brisvag/xarray
N-D labeled arrays and datasets in Python