browningChen

browningChen's Stars

• JChander/DeepRIG

  A deep model infers gene regulation networks from scRNA-seq data.

  Language:Jupyter Notebook91

• sgoldenlab/simba

  SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers

  Language:Python297143

• MouseLand/suite2p

  cell detection in calcium imaging recordings

  Language:Jupyter Notebook354241

• AdaptiveMotorControlLab/DLC2Kinematics

  a module for kinematic analysis of deeplabcut outputs

  Language:Jupyter Notebook13426

• ETHZ-INS/DLCAnalyzer

  R Scripts to analyze deep lab cut point data and related data

  Language:R6016

• DeepLabCut/DLCutils

  Various scripts to support deeplabcut and what to do afterwards!

  Language:Jupyter Notebook14467

• tangguoling/ADPT

  Anti-drift pose tracker (ADPT): A transformer-based network for robust animal pose estimation cross-species

  Language:Python9

• carden24/Bioinformatics_scripts

  Scripts UBC

  Language:Python511

• aertslab/pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python435181

• aertslab/SCENIC

  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

  Language:HTML41694

• hayashi-laboratory/deeplabcut-analysis

  A script for analyzing the data of novel object recognition and Y-maze test generated by DeepLabCut

  Language:Jupyter Notebook71

• pyratlib/pyrat

  PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming can perform animal behavior analysis more simpler.

  Language:Jupyter Notebook465

• tzhu-bio/cisDynet

  An integrated platform for modeling gene-regulatory dynamics and networks

  Language:R273

• practical-tutorials/project-based-learning

  Curated list of project-based tutorials

  203k26.5k

• AdaptiveMotorControlLab/AmadeusGPT

  We turn natural language descriptions of behaviors into machine-executable code

  Language:Python2028

• uncbiag/SimpleClick

  SimpleClick: Interactive Image Segmentation with Simple Vision Transformers (ICCV 2023)

  Language:Python21433

• anl13/animal_papers

  Awesome papers for markerless animal motion capture and 3D reconstruction.

  Language:Python25114

• anl13/MAMMAL_core

  Official code for the manuscript "Three-dimensional surface motion capture of multiple freely moving pigs using MAMMAL"

  Language:C++13