browningChen

browningChen's Stars

• drieslab/Giotto

  Spatial omics analysis toolbox

  Language:R26498

• SharkTomorrow/ss_ssr_shadowsocket_clash_clashr_v2ray__trojan_ipcl

  自由上网，科学上网机场推荐，ss, ssr, v2ray, trojan, clash, clashr，客户端末尾自取

  14316

• CompEpigen/figeno

  Tool for plotting sequencing data along genomic coordinates.

  Language:Python2498

• valegarman/HippoCookBook

  MATAB-based repository for ephys experiments and data analysis

  Language:MATLAB81

• RegnerM2015/scENDO_scOVAR_2020

  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignancies", Regner et al., 2021

  Language:R347

• ma-seefelder/ProteinCoLoc

  Language:Julia4

• farhanaugustine/DeepLabCut-Analysis-Jupyter-Scripts

  While DLCAnalyzer and DLC Helper functions are great. They fail to accommodate a vast range of behavior investigator's needs. The Jupyter script provided here is meant for post processing/analyzing DeepLabCut (DLC) CSV files. The script allows user to filter data, calculate velocities, draw Region of Interest (ROI), and more.

  Language:Jupyter Notebook51

• hoholee/C9_ALS_FTD_single_nuclei_transcriptome_epigenome

  Code repository for analysis in "Divergent impacts of C9orf72 repeat expansion on neurons and glia in ALS and FTD"

  Language:R53

• smorabit/hdWGCNA

  High dimensional weighted gene co-expression network analysis

  Language:R35735

• GreenleafLab/ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R387138

• martinjzhang/scDRS

  Single-cell disease relevance score (scDRS)

  Language:Jupyter Notebook11316

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k987

• thomasp85/ggdag

  :arrow_lower_left: :arrow_lower_right: An R package for working with causal directed acyclic graphs (DAGs)

  15

• huang-sh/astk

  Alternative Splicing ToolKit

  Language:Python9

• flemingtonlab/SpliceV

  Visualize coverage, canonical, and backsplice junctions.

  Language:Python113

• fanfansann/fanfan-deep-learning-note

  《繁凡的深度学习笔记》代码、PDF文件仓库

  Language:Jupyter Notebook17613

• gao-lab/Guideline-for-Computational-Biology-and-Bioinformatics

  31494

• EwanXiong/RNA-Seq-pipeline

  RNA-seq analysis including fusion-gene, SNP/Idel, Alternative splicing, et al.

  Language:Shell5

• DiseaseTranscriptomicsLab/betAS

  Intuitive analysis and visualisation of differential alternative splicing based on beta distributions.

  Language:R82

• YeoLab/flotilla

  Reproducible machine learning analysis of gene expression and alternative splicing data

  Language:Jupyter Notebook12126

• Xinglab/PEGASAS

  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

  Language:Python1811

• quadbio/Pando

  Multiome GRN inference.

  Language:R11121

• kerseviciute/aPEAR

  Enrichment Networks for Pathway Enrichment Analysis

  Language:R359

• charlax/python-education

  Reading list for ramping up with professional Python

  Language:Python823102

• samuel-marsh/scCustomize

  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

  Language:R21324

• traja-team/traja

  Python tools for spatial trajectory and time-series data analysis

  Language:Jupyter Notebook10025

• jakevdp/PythonDataScienceHandbook

  Python Data Science Handbook: full text in Jupyter Notebooks

  Language:Jupyter Notebook43.2k17.9k

• Avik-Jain/100-Days-Of-ML-Code

  100 Days of ML Coding

  45.4k10.6k

• ml-tooling/best-of-ml-python

  🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.

  17.3k2.5k

• Stability-AI/StableCascade

  Official Code for Stable Cascade

  Language:Jupyter Notebook6.5k533