Pinned Repositories
2020-08-11-smithsonian
Workshop website for August 11/12 and 18/19 Data Carpentry
Callipogon_SDM
Species distribution modeling of Callipogon relictus
CIL_image_scaler
Shiny interface to place scales in CIL images
inaturalist_tools
Scripts to interact with iNaturalist API
Insect_Egg_Phylogeny
Scripts used to assemble the phylogenetic dataset, infer trees and plot them in Church et al 2019 (https://doi.org/10.1101/471946)
matrix_condenser
An interactive tool to visualize the effects of reducing missing data or removing samples in ddRAD and other similar datasets
rad_palm_weevil
Code used in the analyses of population divergence of palm-associated weevils, published at https://doi.org/10.1038/s42003-020-01482-3
TaxReformer
A python program to check species names on Open Tree Taxonomy and Global Names Server
usnps_to_nexus
A simple script that converts pyRAD unlinked_snps file to a NEXUS file suitable for SNAPP
varKoder
Tool for DNA barcoding based on variation in short k-mer frequencies
brunoasm's Repositories
brunoasm/matrix_condenser
An interactive tool to visualize the effects of reducing missing data or removing samples in ddRAD and other similar datasets
brunoasm/TaxReformer
A python program to check species names on Open Tree Taxonomy and Global Names Server
brunoasm/usnps_to_nexus
A simple script that converts pyRAD unlinked_snps file to a NEXUS file suitable for SNAPP
brunoasm/varKoder
Tool for DNA barcoding based on variation in short k-mer frequencies
brunoasm/inaturalist_tools
Scripts to interact with iNaturalist API
brunoasm/Insect_Egg_Phylogeny
Scripts used to assemble the phylogenetic dataset, infer trees and plot them in Church et al 2019 (https://doi.org/10.1101/471946)
brunoasm/rad_palm_weevil
Code used in the analyses of population divergence of palm-associated weevils, published at https://doi.org/10.1038/s42003-020-01482-3
brunoasm/2020-08-11-smithsonian
Workshop website for August 11/12 and 18/19 Data Carpentry
brunoasm/Callipogon_SDM
Species distribution modeling of Callipogon relictus
brunoasm/CIL_image_scaler
Shiny interface to place scales in CIL images
brunoasm/deMedeiros_Farrell_2018_PeerJ
Code used in de Medeiros BAS, Farrell BD. (2018) Whole-genome amplification in double-digest RADseq results in adequate libraries but fewer sequenced loci. PeerJ 6:e5089 https://doi.org/10.7717/peerj.5089
brunoasm/discretizR
A web interface to help creating discrete morphological characters for phylogenies from measurements
brunoasm/dryophthorinae_rRNA
Phylogenetic analyses of Dryophthorinae using rRNA
brunoasm/Eleicoes2018
App para visualizar a distribuição dos votos para deputado em SP por zona eleitoral
brunoasm/fastai_course
A repository with homework that I did for fast.ai course v3 (https://course.fast.ai/index.html)
brunoasm/geocoding
Repository with python scripts to do geocoding
brunoasm/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
brunoasm/insect_ovariole_number_evolution_2020
Data and code to reproduce the analyses and figures in the manuscript
brunoasm/ipyrad_tools
A collection of scripts that I use to change ipyrad output into other formats
brunoasm/Labrundinia_phylo
Code used to process Illumina data for Labrundinia phylogeny
brunoasm/Medeiros_RBE_2016
Scripts used in analyses and graphs of Medeiros et al.
brunoasm/phylo_scripts
Scripts for working with data and files related to phylogenetics.
brunoasm/revision_anchylorhynchus
Scripts and data files used in the taxonomic revision and morphological phylogeny of Anchylorhynchus
brunoasm/SCPP
Pipeline for SCPP data
brunoasm/seqcap_processor
Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
brunoasm/shell-genomics
brunoasm/tt_tools
Tools for Trees and Taxonomy