bsmn/bsmn-pipeline

Issues

• hg38 versions of gnomad and PON

  #31 opened a year ago by gevro
  2

• AWS Parallelcluster 3 support

  #30 opened a year ago by genomax
  3

• PON Mask for hg38

  #29 opened 4 years ago by wdecoster
  2

• I'm fairly certain the GATK3 download link install_tools uses is broken

  #27 opened 4 years ago by DCGenomics
  1

• what is $PU?

  #21 opened 5 years ago by kdaily
  2

• identify components that have already been containerized

  #3 opened 5 years ago by kdaily
  5

• convert jobs/tasks to a more general definition

  #7 opened 5 years ago by kdaily
  1

• re-write all steps in CWL format

  #11 opened 5 years ago by kdaily
  1

• containerize any components that aren't already

  #12 opened 5 years ago by kdaily
  1

• test first step of containerized, cwl pipeline

  #20 opened 5 years ago by kdaily
  2

• test existing pipeline implementation

  #19 opened 6 years ago by kdaily
  26

• document how to generate sample list file

  #5 opened 6 years ago by kdaily
  3

• add minimal documentation

  #1 opened 6 years ago by kdaily
  3

• determine all dependencies

  #2 opened 6 years ago by kdaily
  2

• define cfncluster configuration

  #6 opened 6 years ago by kdaily
  8

• implement without dependency on SGE

  #4 opened 6 years ago by kdaily
  0