btmartin721
I am a data scientist, population geneticist and bioinformatician with experience in Python, R, and Linux BASH shell.
South Orange, NJ
Pinned Repositories
arcGIS
Scripts for processing arcGIS files.
ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
file_converters
File conversion scripts for DNA sequence data
makePopMap
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
mecr_boxturtle
Collection of scripts for doing and plotting machine learning species delimitation results
PG-SUI
Python machine learining API to impute missing genotypes from population genomic data
phylip2eigenstrat
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
R_scripts
Scripts written in R
raxml_ascbias
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
SNPio
API to read, write, and filter DNA sequence alignment files
btmartin721's Repositories
btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
btmartin721/raxml_ascbias
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
btmartin721/file_converters
File conversion scripts for DNA sequence data
btmartin721/PG-SUI
Python machine learining API to impute missing genotypes from population genomic data
btmartin721/SNPio
API to read, write, and filter DNA sequence alignment files
btmartin721/construct_pipeline
Pipeline for running conStruct on a distributed HPC system
btmartin721/ddrad_scripts
Random scripts for dealing with ddRAD data, including output from pyRAD
btmartin721/mecr_boxturtle
Collection of scripts for doing and plotting machine learning species delimitation results
btmartin721/R_scripts
Scripts written in R
btmartin721/makePopMap
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
btmartin721/acamel-cookiecutter
cookiecutter template for consistency with directory structure among analyses
btmartin721/acamel_filemanager
Automated system to manage acamel project analyses.
btmartin721/biostats.github.io
Site to host Biostats textbook pages.
btmartin721/btmartin721
btmartin721/dfoil_hdf5
DFOIL: Introgression Testing for Five Taxa
btmartin721/fileman
Research project file manager
btmartin721/FSPTS
btmartin721/gtseq_pipeline
Pipeline to run GTSeq data through an analytical pipeline.
btmartin721/KickerPickerTracker
Track Dynasty Startup Kicker Pick Order using the Sleeper API
btmartin721/KickerPickerTracker-frontend
Front end for KickerPickerTracker web app.
btmartin721/locator
deep learning prediction of geographic location from individual genome sequences
btmartin721/martin_lab_website
My personal website for my research lab.
btmartin721/ParselTongue
btmartin721/pbs_scripts
Some PBS scripts I used to submit my jobs to the University of Arkansas's HPC cluster
btmartin721/pyfuncs
Python functions that I commonly use.
btmartin721/scripts
Random scripts, mostly for dealing with RADseq data and DNA sequence alignments
btmartin721/startup_dynasty_trade_calc
Pull from Keep Trade Cut then create a table to host on Netlify.
btmartin721/stephenajulu
My Bio
btmartin721/uml_imputer
Impute missing SNP data using unsupervised machine learning
btmartin721/visualize_distributions
Simple little script to visualize a few types of distributions, given common parameter settings.