Pinned Repositories
10x_scRNAseq
Code and summary data repo for 10x scRNAseq project
buenrostrolab.github.io
Buenrostro Lab Webpage Repo
cellrangerRkit
v1.1.0
chromVARguide
Repo for walking through a chromVAR sample analysis
dscATAC_analysis_code
Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
FigR
Functional Inference of Gene Regulation
inferCNV
Inferring CNV from Single-Cell RNA-Seq
slide_dna_seq_analysis
Analysis of slide-DNA-seq data in Zhao, Chiang, et al.
stimATAC_analyses_code
All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
tss-annotation
Simple reproducible managment of annotated TSS and gene bodies
buenrostrolab's Repositories
buenrostrolab/stimATAC_analyses_code
All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
buenrostrolab/FigR
Functional Inference of Gene Regulation
buenrostrolab/dscATAC_analysis_code
Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
buenrostrolab/cellrangerRkit
v1.1.0
buenrostrolab/tss-annotation
Simple reproducible managment of annotated TSS and gene bodies
buenrostrolab/slide_dna_seq_analysis
Analysis of slide-DNA-seq data in Zhao, Chiang, et al.
buenrostrolab/10x_scRNAseq
Code and summary data repo for 10x scRNAseq project
buenrostrolab/chromVARguide
Repo for walking through a chromVAR sample analysis
buenrostrolab/buenrostrolab.github.io
Buenrostro Lab Webpage Repo
buenrostrolab/chromVARmotifs
R package with motifs for use with chromVAR
buenrostrolab/easyLift
R package for easy mm9 <-> mm10 / hg19 <-> hg38
buenrostrolab/ImmGen_amit
Repository for code/data for mouse heme RNA/ATAC/ChIP-Seq
buenrostrolab/inferCNV
Inferring CNV from Single-Cell RNA-Seq
buenrostrolab/lungATAC_analysis_code
buenrostrolab/mitoblacklist
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
buenrostrolab/10x_multibead_images
Repo for images for 10X imaging
buenrostrolab/bap
Bead single-cell atac processing
buenrostrolab/biorad_scRNAseq
CL Analysis of BioRad scRNA-seq data
buenrostrolab/differential_expression_example
Sample repo for running DESeq2 on HTSeq (counts)
buenrostrolab/GMP_analyses_code
buenrostrolab/hemeGWASanno
Deviation scores for GWAS hits
buenrostrolab/ImmGen
Analyses pertaining to ImmGen
buenrostrolab/immgen_atac_rna_data
Repository that pairs the ImmGen ATAC and RNA data (Yoshida et al 2019 Cell)
buenrostrolab/ImmGenATAC
CALs Presentation for ImmGen
buenrostrolab/indrops_sm
07March Runs at first
buenrostrolab/kmercor
Mouse kmer corr
buenrostrolab/labknowledge
Institutional Knowledge, Tips, & Tricks
buenrostrolab/PEAT
An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
buenrostrolab/proatac
Preprocessing pipeline for (sc)ATAC data
buenrostrolab/singlecell_bloodtraits
Data/analysis repository for "Interrogation of human hematopoiesis..." paper