buenrostrolab/FigR

Issues

• Error in pairCells function

  #30 opened a year ago by LalicJ
  3

• Determine pairs through optimized bipartite matching ..

  #29 opened a year ago by liziyu-000
  15

• long vectors not supported for PairCells

  #4 opened 2 years ago by sallyqus
  4

• how to solve the problem that memeory usage is too large

  #28 opened a year ago by chenc327
  0

• Error in plotfigRNetwork

  #26 opened a year ago by LalicJ
  2

• Should dimensionality reduction be repeated for each subset of a dataset?

  #27 opened a year ago by compbiologist
  2

• runGenePeakcorr error: unable to find an inherited method for function ‘letterFrequency’ for signature ‘"DNAStringSetList"’

  #22 opened 2 years ago by fh34
  1

• no plot showing after plotfigRNetwork()

  #25 opened a year ago by yjchen1201
  2

• runGenePeakcorr - Requesting ability to specify updated genomes (such as mm39)

  #9 opened 2 years ago by iilyashov
  3

• Removing Rik genes from figR.d listing

  #24 opened 2 years ago by sylestiel
  10

• Altering the aesthetics of plotfigRNetwork()

  #20 opened 2 years ago by sylestiel
  6

• Does the RNAmatrix need to be scaled?

  #23 opened 2 years ago by sylestiel
  0

• Going from CellRanger output into FigR

  #13 opened 2 years ago by sylestiel
  2

• Error in runGenePeakcorr

  #21 opened 2 years ago by Genki-YAN
  1

• Obtaining cisAssign attributes on multiome dataset

  #15 opened 2 years ago by sylestiel
  1

• runGenePeakcorr error: the condition has length > 1

  #16 opened 2 years ago by lizakulaeva
  3

• How can I generate the cellKNN.mat?

  #19 opened 2 years ago by sylestiel
  11

• Starting from an independent dataset

  #14 opened 2 years ago by lingfeiwang
  5

• Error in filter(., dist == min(dist)) : ... use stats::filter and dplyr::filter instead

  #12 opened 2 years ago by perezja
  2

• Failure to execute runGenePeakcorr

  #18 opened 2 years ago by sylestiel
  5

• Run with cattle data

  #17 opened 2 years ago by liyang24
  0

• Error in library(optmatch) : there is no package called 'optmatch'

  #11 opened 2 years ago by perezja
  1

• Recommend explicity qualifying namespaces

  #6 opened 2 years ago by riguyer
  1

• Unable to install FigR

  #10 opened 2 years ago by sylestiel
  2

• runGenePeakcorr,Using the genomes of other species

  #8 opened 2 years ago by liyang24
  3

• Extreme long processing time for runGenePeakcorr function

  #5 opened 2 years ago by BellaQ2022
  2

• About installation

  #7 opened 2 years ago by pocession
  2

• worker initialization failed: there is no package called ‘FigR’

  #2 opened 2 years ago by sallyqus
  3

• Finding cell type specificity

  #3 opened 2 years ago by waltno
  1

• Possible bug in runFigRGRN

  #1 opened 2 years ago by xibarrasoria
  1