cabeen/epibios-mri-rat

A repo for EpiBioS4Rx rodent MRI

EpiBioS4Rx Rodent MRI

This package provides tools for image analysis for rodent MRI data for EpiBioS4Rx. Built using the Quantitative Imaging Toolkit (QIT).

Dependencies

The makes use of the following packages, which must be installed:

• Bru2Nii
• FSL
• ANTs
• QIT

References

Immonen, R., Smith, G., Brady, R. D., Wright, D., Johnston, L., Harris, N. G., ... & Gröhn, O. (2019). Harmonization of pipeline for preclinical multicenter MRI biomarker discovery in a rat model of post-traumatic epileptogenesis. Epilepsy research, 150, 46-57.

Cabeen, R. P., Immonen, R., Harris, N. G., Gröhn, O., Smith, G., Manninen, E., ... & Toga, A. W. (2020, April). A computational diffusion mri framework for biomarker discovery in a rodent model of post-traumatic epileptogenesis. In 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) (pp. 1013-1017). IEEE.

Contact

Author: Ryan Cabeen, cabeen@gmail.com