cafferychen777/ggpicrust2

Issues

• pathway_errorbar error

  #117 opened 25 days ago by DeniRibicic
  7

• pathway_errorbar no longer working to graph data

  #109 opened 4 months ago by AbbiHern
  1

• Is this package compatible with other ggplot functions?

  #110 opened 3 months ago by chung-wingko
  1

• # Perform pathway DAA using ALDEx2 method not working with example dataset

  #116 opened a month ago by JayalalKJ
  1

• Error in switch(file_format, .txt = abundance <- readr::read_delim(file, : EXPR must be a length 1 vector**

  #112 opened 2 months ago by bplet01
  2

• Error in if (dispersion == 1) "LRT" else "scaled dev." : missing value where TRUE/FALSE needed

  #78 opened 10 months ago by Selucote8223
  6

• 'pathway_daa' function - Undefined colums selects

  #68 opened 10 months ago by gonzalofe
  3

• pathway_annotation error "An error occurred. Retrying......"

  #115 opened a month ago by jw0531jung
  3

• Error pathway_errorbar "`$<-.data.frame`(`*tmp*`, "group", value = c(2L, 2L, 2L, 2L, : replacement has 20 rows, data has 1"

  #111 opened 3 months ago by raqxavier
  2

• The 'method' column in the 'daa_results_df' data frame contains more than one method.

  #105 opened 6 months ago by freemutation
  2

• Help needed using sample dada Math.factor ‘round’ not meaningful for factors

  #107 opened 4 months ago by jrhaulung
  2

• undefined columns selected and ‘round’ not meaningful for factors

  #102 opened 6 months ago by antonkratz
  3

• pathway_pca

  #108 opened 4 months ago by raqxavier
  4

• The 'group1' or 'group2' column in the 'daa_results_df' data frame contains more than one group. Please filter each to contain only one group.

  #72 opened 10 months ago by saassli21
  6

• ALDex2 issue

  #67 opened a year ago by SRuwi
  9

• All my pathway results are NA

  #106 opened 5 months ago by Elixir0822
  0

• issue while running pathway_errorbar()

  #65 opened a year ago by DaliBAmor
  20

• Question about filtering features and groups

  #88 opened 8 months ago by pig-raffles
  7

• pathway_errorbar() : The 'method' column in the 'daa_results_df' data frame contains more than one method. Please filter it to contain only one method.

  #86 opened 8 months ago by IloveUKarna
  3

• How to obtain log-fold change values?

  #103 opened 6 months ago by andrewd789
  3

• Error in `guide_transform()`: ! <Guide> classes have been rewritten as <ggproto> classes.

  #101 opened 6 months ago by antonkratz
  3

• curl_fetch_memory

  #104 opened 6 months ago by mccannpeter
  4

• Issue with pathway_errorbar : "The `legend.text.align` theme element is not defined in the element hierarchy."

  #94 opened 6 months ago by scilexenko
  6

• add a title to errorbar and heatmap

  #92 opened 8 months ago by SueFletcher
  9

• error with MicrobiomeStat

  #100 opened 7 months ago by saassli21
  5

• pathway_errorbar nonspecific error

  #74 opened 10 months ago by AbbiHern
  7

• Error in `plot_theme()`: ! The `legend.text.align` theme element is not defined in the element hierarchy.

  #98 opened 7 months ago by lananh-ngn
  2

• Error in ggpicrust2 (There are no statistically significant biomarkers in the dataset)

  #96 opened 7 months ago by erda712
  4

• Installation issues with Rfast

  #93 opened 8 months ago by camcecc
  2

• Issue plotting LinDA results as heatmap when ko_to_kegg = FALSE

  #84 opened 8 months ago by BiggusDickus666
  4

• ggpicrust2(): Error in `metadata[, matching_columns]`:

  #64 opened a year ago by WillErickson1
  10

• Error from pathway_errorbar

  #91 opened 8 months ago by lingvv
  1

• ggpicrust on ITS : Error in `$<-.data.frame`(`*tmp*`, "description", value = character(0)) : le tableau de remplacement a 0 lignes, le tableau remplacé en a 1

  #81 opened 9 months ago by SueFletcher
  5

• pathway_heatmap cannot reorder

  #90 opened 8 months ago by gaimingle10
  1

• pathway_daa()

  #89 opened 8 months ago by manijehmahdavi
  1

• How to model for mixed effects?

  #82 opened 9 months ago by otaviolovison
  1

• Using ggpicrust2 for more than 2 groups.

  #80 opened 9 months ago by lcamVz
  1

• Stratified data

  #79 opened 10 months ago by BiggusDickus666
  2

• PICRUSt2 tsv file is unformatted/not recognized when opened in ggpicrust2

  #76 opened 10 months ago by PaulaEterovick
  2

• "Error in dim[2] - index pathway_heatmap

  #75 opened 10 months ago by xinguo1236
  1

• Question about p-value(adjusted) in errorbar graph

  #70 opened 10 months ago by microbialkim
  3

• errobar interpretation

  #69 opened 10 months ago by saassli21
  5

• Issue with MetaCyc pathway annotation

  #71 opened 10 months ago by etodd8
  0

• pathway_daa(): Error in metadata[, matching_columns]: ! Can't subset columns with matching_columns. ✖ Subscript matching_columns can't contain missing values. ✖ It has a missing value at location 1.

  #58 opened a year ago by GeoffreyOlweny
  6

• How to use plotly to generate interactive ggpicrust2 plots

  #66 opened a year ago by ScarlettPegany
  8

• pathway_errorbar(): Editing the images generated using pathway error bar plot analysis

  #63 opened a year ago by Aristotle1992
  12

• pathway_errorbar(): In the results of the pathway_errorbar plot, the p-values cannot be fully displayed

  #57 opened a year ago by benzodiazepines
  1

• pathway_daa(): Error in Math.factor(c(1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, : ‘round’ not meaningful for factors

  #56 opened a year ago by nicharee22
  4

• ggpicrust2 input file

  #60 opened a year ago by DaliBAmor
  3

• ggpicrust2(): incorrect number of dimensions

  #62 opened a year ago by luomeng277
  1