16s-rrna
There are 76 repositories under 16s-rrna topic.
cafferychen777/ggpicrust2
Make Picrust2 Output Analysis and Visualization Easier
microsud/Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
grimmlab/MicrobiomeBestPracticeReview
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
cafferychen777/MicrobiomeStat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
segrelab/MiCoNE
The Microbial Co-occurrence Network Explorer
tmbuza/iMAP
iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
Ebedthan/hyperex
Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.
ali-kishk/AmpliconNet
Sequence based 16S rRNA Taxonomic classifier using MLP
achillesrasquinha/16SMaRT
16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
hsmurali/SCRAPT
SCRAPT: An Iterative Algorithm for Clustering Large 16S rRNA Gene Datasets
oschakoory/RiboTaxa
RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
ravel-lab/speciateIT
Fast, accurate taxonomic assignments for the human vaginal microbiota
biomarv/16S-rRNA-gene-analysis-using-QIIME2
QIIME2 worklflow. From raw data to a feature table.
xapple/crest4
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
cafferychen777/MicrobiomeStat-Turtorial-Professional-Version
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
jedick/chem16S
Chemical metrics for microbial communities
oma219/cliffy
16S rRNA read classification using compressed document listing
tianrenmao/16S-18S-ITS-ASAP
This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequences.
dizak/mothulity
Easy-to-use tool facilitating work with Mothur.
nlabrad/CIMS-Cyanobacterial-ITS-motif-slicer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
raymondkiu/bactspeciesID
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
rwst/process-ubiome-16S
process raw reads from ubiome
SchlossLab/mothur-snakemake-workflow
Snakemake template for microbial amplicon sequence analysis with mothur.
Shuyib/Phylogenetic-tree-study
Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7
BCCDC-PHL/16s-nf
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
dschnei1/ngs4ecoprod
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
IMCBioinformatics/dada2_16S_workflow
Amplicon sequencing workflow with snakemake and dada2
jinhuili-lab/MicrobioSee2
MicrobioSee2, a desktop sofware for visulization of microbiome result, which contian multiple modules, such as Alpha Diversity, Beta Diversity, Species Conpositions, volcano plot, and pie chart.
NewtonLabUWM/Sewage_TimeSeries
Data and code for LaMartina et al., 2021
raymondkiu/16S_extraction_Barrnap
Automated 16S sequence extraction using Barrnap output gff files
rjstevick/NBayTNCoystersAnalysis
Scripts for analysis of metatranscriptomic and 16S rRNA amplicon data from wild oysters in Narragansett Bay
xapple/pacmill
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
LMG9509/TFM
Evaluación del impacto del proceso de rarefacción en la detección de comunidades microbianas en datos de amplicones ARNr 16S
rjstevick/loperamide-zebrafish-dysbiosis
Analysis of 16S rRNA and in vitro data from larval zebrafish with loperamide treatment