caitiecollins/treeWAS

Issues

• Error in rep(0, max(noms)) : invalid 'times' argument

  #78 opened 8 days ago by IsobelGuthrie
  1

• ClonalFrameML input and treeWAS output position

  #77 opened 3 months ago by Angelika-2Z-Borowiecka
  0

• input data

  #63 opened 2 years ago by mohammadzarrabian
  5

• negative association score

  #76 opened 4 months ago by DorothyTamYiLing
  2

• issue with loading phenotypes

  #75 opened 5 months ago by rderelle
  1

• long vectors not supported yet

  #72 opened 7 months ago by daisy238
  3

• A warning after treeWAS

  #74 opened 6 months ago by allanlinzhang
  0

• A warning after

  #73 opened 6 months ago by allanlinzhang
  0

• About the significant snps

  #71 opened a year ago by xqzangnolan
  0

• Error in treeWAS(snps = snps, phen = phen, tree = tree, n.subs = NULL, : Some elements of tree$tip.label are absent from names(phen).

  #70 opened a year ago by xqzangnolan
  1

• memory error

  #69 opened 2 years ago by DorothyTamYiLing
  0

• multiple testing p values

  #68 opened 2 years ago by DorothyTamYiLing
  0

• Error in ncol(snps.ori) : object 'snps.ori' not found

  #67 opened 2 years ago by jiyekwon
  0

• Ancestral state reconstruction with phytools

  #66 opened 2 years ago by ruutmdlv
  2

• Error in ncol(snps.ori) : object 'snps.ori' not found

  #65 opened 2 years ago by Tonny-zhou
  12

• Error in inputting snps ASR

  #64 opened 2 years ago by moorembioinfo
  3

• Nsim loci simulation and subsequent test understanding

  #62 opened 2 years ago by DorothyTamYiLing
  3

• Too few positive probabilities Error

  #54 opened 3 years ago by amzurita
  2

• how to construct a snp matrix

  #60 opened 2 years ago by ShiminYang97
  1

• Testing burden score binary variants association

  #61 opened 2 years ago by DorothyTamYiLing
  3

• Question about the output tree from TreeWAS

  #59 opened 2 years ago by npbhavya
  1

• Just a question: Can you recommend method for SNPs matrix generation?

  #57 opened 3 years ago by martinastoycheva
  2

• Test data annotation

  #58 opened 3 years ago by Maxime5G
  0

• Installation issue - dplyr_reconstruct/adegenet error

  #52 opened 3 years ago by GaryNapier
  0

• Installation of treeWAS

  #53 opened 3 years ago by mozammel47
  0

• Huge peak in the distribution of terminal scores

  #55 opened 3 years ago by pchamely-2
  0

• TreeWAS on animal and plants?

  #56 opened 3 years ago by ViriatoII
  0

• Coding genotype for diploids

  #43 opened 3 years ago by YannDussert
  0

• Need to help to find effect/odds ratio

  #45 opened 3 years ago by liweicheng0011
  0

• QQ plot behavior

  #50 opened 3 years ago by jpa24
  0

• Memory problems

  #51 opened 3 years ago by GaryNapier
  2

• plot_phen

  #37 opened 3 years ago by evezeyl
  1

• No polymorphism detected

  #42 opened 3 years ago by ywx1
  0

• Tree Plot Error: Error in num2col(var, col.pal = seasun) : could not find function "num2col"

  #34 opened 3 years ago by WallyL
  12

• Warning when comparing columns in snps.reconstruction and snps matrix.

  #47 opened 4 years ago by arturotorreso
  3

• p.value question

  #49 opened 4 years ago by mrchase62
  2

• 'snps must be a binary matrix' error with my data, works fine with example data

  #48 opened 4 years ago by antoineluc
  0

• Error in phangorn dependency - non-binary tree

  #46 opened 5 years ago by mycologenomics
  2

• Accessing data points not considered significant

  #44 opened 5 years ago by jessg28
  1

• Base insertion and deletion

  #41 opened 5 years ago by ywx1
  3

• add to CRAN?

  #40 opened 5 years ago by nick-youngblut
  5

• Axis problem

  #38 opened 5 years ago by Nerdobyte
  1

• Error in generating Manhattan plot

  #39 opened 5 years ago by JialunWu
  2

• gene presence absence and input simple question

  #36 opened 5 years ago by camilo-monge
  1

• install error..

  #31 opened 5 years ago
  6

• Launching error TreeWas

  #35 opened 5 years ago by sekhwal
  3

• General question about phenotype data

  #33 opened 5 years ago by WallyL
  2

• browseVignettes("treeWAS") & test data set fails

  #32 opened 5 years ago by WallyL
  3

• about the recombination

  #30 opened 6 years ago by zhaoxvwahaha
  1

• How can I get accurate P.value

  #29 opened 6 years ago by zhaoxvwahaha
  2