Pinned Repositories
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
bashcrawl
LHM
Contains 16S metabarcoding analyses for LHM samples.
SASS-Data-Analysis
training-requirements
Training requirements for joining projects
workshop_day2
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
CIMS-Cyanobacterial-ITS-motif-slicer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
MicEco
Various functions for analysis of microbial community data
16S-ITGDB
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
callmcgovern's Repositories
callmcgovern/bashcrawl
callmcgovern/SASS-Data-Analysis
callmcgovern/training-requirements
Training requirements for joining projects
callmcgovern/workshop_day2
callmcgovern/CIMS-Cyanobacterial-ITS-motif-slicer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
callmcgovern/Metagenomics-Analyses
16S rRNA metagenomics analyses performed during graduate school
callmcgovern/PADDLE
PADDLE: Predict transcription factor activation domains from protein sequence
callmcgovern/scRNA_seq
scRNA_seq