cancerit/telomerecat

Issues

• Different results with same file as input. Results not reliable.

  #46 opened a year ago by spnlab
  3

• Telomere length not as expected in healthy blood

  #47 opened 6 months ago by Urja25
  0

• Floating point error

  #45 opened a year ago by jgmayer67
  0

• when only 100 telo reads, results are unstable

  #2 opened 5 years ago by byb121
  4

• telbam file failed to generate

  #43 opened a year ago by eliu98
  0

• telomere length csv

  #44 opened a year ago by eliu98
  0

• Extremely low read counts and telomere length

  #42 opened 2 years ago by sbrt
  2

• Telomerecat showing error while running

  #41 opened 2 years ago by Srij-98
  1

• Slow process

  #40 opened 2 years ago by YiweiNiu
  0

• Would telomerecat work with single cell DNA sequencing data?

  #39 opened 2 years ago by rodrigoduarte88
  2

• StopIteration - pysam_collate/bam2telbam etc

  #31 opened 3 years ago by keiranmraine
  4

• issue run TelomereCat

  #38 opened 3 years ago by jpkoc
  0

• --Reference option for decoding cram not recognized

  #37 opened 3 years ago by zlskidmore
  3

• Telomere length is zero

  #35 opened 3 years ago by kacyng92
  7

• Change request: add docker run command to docs/readme

  #36 opened 3 years ago by chrispyatt
  0

• Pysam collate error

  #32 opened 3 years ago by cwine
  3

• Migrate from travis to CircleCI

  #25 opened 3 years ago by keiranmraine
  1

• setup.py asking for parabam release that doesn't exist

  #29 opened 3 years ago by chrispyatt
  5

• telbam.collate_pairs() - not used

  #30 opened 3 years ago by keiranmraine
  0

• Can't install latests Bug fix release 3.4.1

  #28 opened 3 years ago by talshakedhuji
  1

• Telomere length estimation from WXS bam?

  #26 opened 3 years ago by tc86
  1

• Docker container appears to be broken

  #27 opened 3 years ago by chrispyatt
  1

• Parabam coming to abrupt halt

  #15 opened 3 years ago by dylanzhao1993
  1

• unknown error

  #16 opened 3 years ago by kikinocka
  1

• Does Telomerecat accepts CRAM file as input instead of BAM file?

  #21 opened 3 years ago by Ramanandan
  2

• Telomerecat hangs

  #23 opened 3 years ago by keiranmraine
  3

• unexpected error

  #12 opened 4 years ago by xtmgah
  5

• Insert option for bam2length

  #3 opened 4 years ago by rpshep
  4

• command 'telomerecat' does not have option -v or -h

  #5 opened 4 years ago by byb121
  1

• all commands exits 0 even with non-exist options

  #6 opened 4 years ago by byb121
  1

• Tumour Tissue Sample Estimation and Purity

  #18 opened 4 years ago by DarioS
  1

• Usage Instructions Missing

  #19 opened 4 years ago by DarioS
  2

• Could not retrieve index file

  #20 opened 4 years ago by radwaraed
  9

• user reported slow process

  #13 opened 4 years ago by byb121
  13

• Error message in bam2telbam

  #22 opened 4 years ago by davidroberson
  1

• lots of lines showing "Could not retrieve index file for...."

  #14 opened 4 years ago by dylanzhao1993
  19

• no obvious linkage to or from jhrf/telomerecat

  #10 opened 4 years ago by mcast
  1

• move doc from readthedocs.io to this repo

  #8 opened 5 years ago by byb121
  0

• license may need update

  #7 opened 5 years ago by byb121
  1

• temporary folder location

  #1 opened 5 years ago by byb121
  1