cancervariants/disease-normalization
Services and guidelines for normalizing disease terms
PythonMIT
Issues
- 1
Update OMIM refs in Disease Ontology
#180 opened by jsstevenson - 0
All mondo xrefs are broken
#197 opened by jsstevenson - 2
Only create normalized groups for sizes n > 1
#110 opened by jsstevenson - 6
Unable to normalize MetaKB terms
#77 opened by korikuzma - 0
Add `omim-directory` console entrypoint
#190 opened by jsstevenson - 1
Capture SSSOM mappings from MONDO
#72 opened by jsstevenson - 1
Handling grade in cancers
#66 opened by jsstevenson - 1
Return all matches in search/
#68 opened by jsstevenson - 1
Add basic route tests
#158 opened by jsstevenson - 1
- 1
Add methods to fetch parent/child/sibling terms
#139 opened by jsstevenson - 1
Refine `Base.load_disease()`
#173 opened by jsstevenson - 2
Remove remaining flake8-associated materials
#134 opened by jsstevenson - 2
Pickier ingest of xrefs/associated_with
#172 opened by jsstevenson - 1
Include descendants of MONDO_0021178 ("injury")
#119 opened by jsstevenson - 1
Remove search result formatting options
#133 opened by jsstevenson - 1
- 2
Add documentation
#132 opened by jsstevenson - 1
Indicate whether term is oncologic
#91 opened by jsstevenson - 1
Remove format option in /search
#156 opened by jsstevenson - 4
NCIt import issues
#120 opened by jsstevenson - 0
readthedocs in readme give 404
#186 opened by korikuzma - 0
Expected `SourceMeta` but got `dict` - serialized value may not be as expected
#174 opened by korikuzma - 1
Don't import obsolete MONDO/NCIt concepts
#93 opened by jsstevenson - 1
Catch ETL import errors in CLI
#157 opened by jsstevenson - 1
Use pyproject.toml for setup/build
#159 opened by jsstevenson - 2
Replace bioversions dependency
#141 opened by jsstevenson - 1
Add get_all_records DB method
#136 opened by jsstevenson - 1
merge concepts + metadata tables
#155 opened by korikuzma - 6
TypeError while loading Mondo
#142 opened by jsstevenson - 0
fix `_record_order` priority
#143 opened by korikuzma - 0
Update dynamo table usage
#137 opened by jsstevenson - 4
Use bioversions to get MONDO version
#103 opened by korikuzma - 2
- 0
Support lookup by context free OncoTree code
#92 opened by jsstevenson - 0
Remove therapy references due to copy/paste
#118 opened by korikuzma - 0
Overhaul test fixtures
#107 opened by jsstevenson - 3
- 0
- 0
Get GitHub Actions to pass
#96 opened by korikuzma - 0
Revert `DiseaseDescriptor.disease` to `DiseaseDescriptor.disease_id` in main
#100 opened by korikuzma - 0
Cleanup click message format
#97 opened by korikuzma - 0
- 0
Normalization wonkiness
#80 opened by jsstevenson - 1
- 5
Transition to serverless
#82 opened by korikuzma - 0
- 0
update vrsatile-pydantic dependency
#63 opened by jsstevenson - 0
Get app logs to show in EB
#61 opened by korikuzma - 0