precision-medicine
There are 70 repositories under precision-medicine topic.
mims-harvard/TDC
Therapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science
cBioPortal/cbioportal
cBioPortal for Cancer Genomics
mims-harvard/PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
GenomicsDB/GenomicsDB
High performance data storage for importing, querying and transforming variants.
drizopoulos/JMbayes2
Extended Joint Models for Longitudinal and Survival Data
nt-williams/lmtp
:package: Non-parametric Causal Effects Based on Modified Treatment Policies :crystal_ball:
rhshah/IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
mims-harvard/TxGNN
TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design
poseidonchan/TAPE
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
jakelever/cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
aquaskyline/Skyhawk
An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
KCCG/mity
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
jaredhuling/personalized
Methods for subgroup identification / personalized medicine / individualized treatment rules
jakelever/civicmine
Text mining cancer biomarkers for the CIVIC database
pasmopy/pasmopy
Patient-Specific Modeling in Python
ablucher/The-Cancer-Targetome
Initial data release for drug-target interactions of the cancer targetome.
levenc/posologyr
Bayesian dosing in R
NCBI-Hackathons/phenotypeXpression
Subclassification of disease states based on the intersection of literature and expression
web4bio/webgen
WebGen Vertically Integrated Project
cancervariants/therapy-normalization
Services and guidelines for normalizing drug and other therapy terms
NCBI-Codeathons/OMOPOmics
Patient 'omics data in OMOP format
GeodAIsics/TractLearn-WholeBrain
TractLearn is a Manifold Learning Toolbox for precision medicine. The first application is for Diffusion-Weighted MRI quantitative analysis.
knowledgesystems/mutationhotspots
Algorithms to detect mutational hotspots
YuxingLu613/HTML
Code for paper Multiomics dynamic learning enables personalized diagnosis and prognosis for pan-cancer and cancer-subtypes
matthew-mcateer/NIPS2017competition
Data & Scripts for the Memorial Sloan Kettering Cancer Center's (MSKCC) request for a machine learning algorithm that, using annotated information on genomic variants, automatically classifies genetic variations as either neutral or cancerous.
OPMI/opmi
OPMI: Ontology of Precision Medicine and Investigation
isotlaboratory/Healthcare-Security-Analysis-MLE
Official repo of the article: Briguglio, W., Moghaddam, P., Yousef, W. A., Traore, I., and Mamun, M. (2021) "Machine Learning in Precision Medicine to Preserve Privacy via Encryption". arXiv Preprint, arXiv:2102.03412.
cancervariants/disease-normalization
Services and guidelines for normalizing disease terms
eipm/pmkb-bot
PMKB bot for the Precision Medicine Knowledge Base using Microsoft Bot Framework.
ICBI/gdoc
G-DOC Web Application
ICBI/Open-Science-Projects
Open Science Projects at Georgetown-ICBI
mims-harvard/scCIPHER
scCIPHER: Contextual deep learning on single-cell-enriched knowledge graphs in neurological disorders
smartdata-analysis-and-statistics/precmed
A doubly robust precision medicine approach to estimate and validate conditional average treatment effects
Duran-FerrerM/Pan-B-cell-methylome
Code accompanying the findings in Duran-Ferrer 2020, Nat Cancer. The epiCMIT mitotic clock calculator and a Pan B-cell tumor classifier algorithm are provided.
uab-cgds-worthey/DITTO-UI
Easy to use web interface for biologists to look for genetic variants and understand their deleteriousness using DITTO scores.
janschneida/taxodist
Python library for similarity calculations in taxonomic hierarchies and the underlying concepts.