cannin/gsoc_2023_pytorch_pathway_commons

Issues

• What are the sizes of the BRCA and ACC Datasets

  #19 opened 6 months ago by cannin
  5

• Submit sample dataset to PyG

  #12 opened 7 months ago by Favourj-bit
  15

• Hyperparameter tuning

  #22 opened 7 months ago by inoue0426
  0

• Create baseline model to compare with GNN models

  #11 opened a year ago by inoue0426
  4

• Use More Trials with AutoKeras

  #21 opened a year ago by cannin
  0

• Try FLAML as a Baseline model

  #20 opened a year ago by cannin
  1

• Update the Description on Zenodo

  #25 opened a year ago by cannin
  1

• Improving gnn model performance

  #23 opened a year ago by Favourj-bit
  1

• Fix Zenodo Links

  #24 opened a year ago by cannin
  1

• Questions to ask PyG

  #18 opened a year ago by cannin
  1

• Use underscores and lower case names

  #16 opened a year ago by cannin
  4

• Larger Dataset to Try

  #13 opened a year ago by cannin
  2

• Change PyG Data Notebook Root from Google Colab

  #17 opened a year ago by cannin
  1

• Build a basic predictive GNN model using PyG to predict overall survival(months) for patients

  #10 opened a year ago by Favourj-bit
  10

• Create match between data_clinical_patient.txt, data_clinical_sample.txt from acc_tcga_pan_can_atlas_2018

  #6 opened a year ago by Favourj-bit
  13

• [Optional] Prediction of survival time after the disease is detected

  #5 opened a year ago by inoue0426
  0

• Make Colab notebook show you can parse cBioPortal and Pathway Commons data

  #2 opened a year ago by cannin
  13

• Make graph visualization using NetworkX

  #4 opened a year ago by inoue0426
  0

• Set up blog

  #1 opened a year ago by cannin
  4