caojiabao

Institute of microbiology, chinese academy of sciencebeijing

Pinned Repositories

16s_pipeline
Language:Perl00
AF-classification
The repo is for the Heart Disease classification project using Transformer Encoders in PyTorch.
Language:Python00
alibaba_tianchi_book
阿里云天池大赛赛题解析
Language:Jupyter Notebook00
awesome-bioinformatics-tools
A curated list of awesome Bioinformatics software, tools and resources
00
awesome-nanopore
A curated list of awesome nanopore analysis tools.
00
BacteriophageHostPrediction
Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"
Language:Jupyter Notebook00
BaseMod-3.0
00
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
Language:PostScript00
biLSTM_attn
Language:Python00
VirPipeline
Profiling of Human Gut Virome with Oxford Nanopore Technology
20

caojiabao's Repositories

caojiabao/AF-classification
The repo is for the Heart Disease classification project using Transformer Encoders in PyTorch.
Language:Python00
caojiabao/alibaba_tianchi_book
阿里云天池大赛赛题解析
Language:Jupyter Notebook00
caojiabao/awesome-nanopore
A curated list of awesome nanopore analysis tools.
00
caojiabao/BacteriophageHostPrediction
Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"
Language:Jupyter Notebook00
caojiabao/biomagician
Useful tools in microbiomics and metagenomics
caojiabao/Chinese-Text-Classification-PyTorch
中文文本分类任务，基于PyTorch实现（TextCNN，TextRNN，FastText，TextRCNN，BiLSTM_Attention, DPCNN, Transformer，Bert，ERNIE），开箱即用！
caojiabao/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
Language:R0 0
caojiabao/CoverM
Read coverage calculator for metagenomics
caojiabao/deep-learning-for-image-processing
deep learning for image processing including classification and object-detection etc.
Language:Python0 0
caojiabao/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
caojiabao/FEAST
Fast expectation maximization for microbial source tracking
Language:R0 0
caojiabao/gggenomes
A grammar of graphics for comparative genomics
caojiabao/ggtreeExtra
:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
caojiabao/kallisto
Near-optimal RNA-Seq quantification
caojiabao/Kaptive
Language:Python0 0
caojiabao/machinelearning
My blogs and code for machine learning. http://cnblogs.com/pinard
caojiabao/MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
caojiabao/METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
Language:R0 0
caojiabao/MGV
Supporting code for uncultivated gut virus manuscript
caojiabao/nlp-notebooks
A collection of notebooks for Natural Language Processing from NLP Town
Language:Jupyter Notebook0 0
caojiabao/PathIden
caojiabao/PhageRBPdetection
Detection of phage RBPs based on protein domains and machine learning
caojiabao/poretools
a toolkit for working with Oxford nanopore data
Language:Jupyter Notebook0 0
caojiabao/Python-100-Days
Python - 100天从新手到大师
Language:Python0 0
caojiabao/python_for_data_analysis_2nd_chinese_version
《利用Python进行数据分析·第2版》
caojiabao/setup-ipsec-vpn
Scripts to build your own IPsec VPN server, with IPsec/L2TP, Cisco IPsec and IKEv2
Language:Shell0 0
caojiabao/Text-Classification-LSTMs-PyTorch
The aim of this repository is to show a baseline model for text classification by implementing a LSTM-based model coded in PyTorch. In order to provide a better understanding of the model, it will be used a Tweets dataset provided by Kaggle.
caojiabao/tutorials
caojiabao/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
caojiabao/viralFlye
viralFlye pipeline
Language:Python0 0