Pinned Repositories
16s_pipeline
AF-classification
The repo is for the Heart Disease classification project using Transformer Encoders in PyTorch.
alibaba_tianchi_book
阿里云天池大赛赛题解析
alphafold
Install alphafold on the local machine, get out of docker.
awesome-bioinformatics-tools
A curated list of awesome Bioinformatics software, tools and resources
awesome-nanopore
A curated list of awesome nanopore analysis tools.
BacteriophageHostPrediction
Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"
BaseMod-3.0
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
VirPipeline
Profiling of Human Gut Virome with Oxford Nanopore Technology
caojiabao's Repositories
caojiabao/VirPipeline
Profiling of Human Gut Virome with Oxford Nanopore Technology
caojiabao/16s_pipeline
caojiabao/alibaba_tianchi_book
阿里云天池大赛赛题解析
caojiabao/Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
caojiabao/Chinese-Text-Classification-Pytorch-1
中文文本分类,TextCNN,TextRNN,FastText,TextRCNN,BiLSTM_Attention,DPCNN,Transformer,基于pytorch,开箱即用。
caojiabao/ClusterGenomes
Archive for ClusterGenomes scripts
caojiabao/CrisprOpenDB
caojiabao/cwSDTWnano
Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the continuous wavelet Subsequence DTW for nanopore raw signal search (cwSDTWnano), to enable the direct subsequence inquiry and exact mapping in the nanopore raw signal datasets. The proposed algorithms are based on the idea of Subsequence-extended Dynamic Time Warping (SDTW) and directly operates on the raw signals, without any loss of information. DSDTWnano could ensure an output of highly accurate query result and cwSDTWnano is the accelerated version of DSDTWnano, with the help of seeding and multi-scale coarsening of signals that based on continuous wavelet transform (CWT).
caojiabao/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
caojiabao/GRAViTy
caojiabao/Kieft_and_Zhou_et_al._2020
caojiabao/kmer_models
Predictive kmer models for development use
caojiabao/long-read-catalog
catalog for long-read sequencing tools
caojiabao/METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
caojiabao/MicrobiomeStatPlot
Interpretation and visualization of microbiome charts
caojiabao/minced
Mining CRISPRs in Environmental Datasets
caojiabao/my_WGCNA
WGCNA_analysis
caojiabao/ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
caojiabao/NGS-analysis
二代测序数据分析
caojiabao/Numerical_Ecology_with_R-Second
Making notes during study 'Numerical Ecology with R second edition'
caojiabao/PhageMiner
A user-supervised semi-automated bioinformatics tool for prophage identification in bacterial genomes
caojiabao/pipeline-transcriptome-de
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
caojiabao/pytorch-generative-model-collections
Collection of generative models in Pytorch version.
caojiabao/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
caojiabao/scRNA-seq
caojiabao/sheng-xin-xiao-bai-yu
历史文档备份
caojiabao/TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
caojiabao/Tet_code
The major code in "Reconstruction and dynamics of human intestinal microbiome observed in situ"
caojiabao/tutorials-1
Tutorials on phylogenetic and phylogenomic inference
caojiabao/vpf-tools
Virus Protein Family tools