Pinned Repositories
10Xmapping
mapping somatic variants to each individual cell based on scRNA-Seq data
commonscripts
commonly used scripts
dailybox
germlinewrapper
detect germline variants from normal samples
hotspotrc
Hotspot mutation readcount
misplice
Discover Mutation Induced Splice Sites
neoscan
predict neoantigen for indel and snvs
somaticwrapper
Detect somatic variants from tumor and normal exome data
virusfusion
detect virus integration sites in host genome
VirusScan
VirusScan Pipeline
caosgc33d's Repositories
caosgc33d/virusfusion
detect virus integration sites in host genome
caosgc33d/VirusScan
VirusScan Pipeline
caosgc33d/10Xmapping
mapping somatic variants to each individual cell based on scRNA-Seq data
caosgc33d/commonscripts
commonly used scripts
caosgc33d/dailybox
caosgc33d/germlinewrapper
detect germline variants from normal samples
caosgc33d/hotspotrc
Hotspot mutation readcount
caosgc33d/misplice
Discover Mutation Induced Splice Sites
caosgc33d/neoscan
predict neoantigen for indel and snvs
caosgc33d/somaticwrapper
Detect somatic variants from tumor and normal exome data
caosgc33d/machinelearning
Algorithm for machine learning
caosgc33d/mgidaily
Dockerfile for mgi
caosgc33d/misplice_gcloud
caosgc33d/mix
mixing scripts
caosgc33d/multiplex-imaging-pipeline
A pipeline for multiplex imaging analysis
caosgc33d/neoflow
NeoFlow is a standalone tool developed based on Nextflow and Docker and is developed for tumor neoantigens identification using DNA-Seq, RNA-Seq and MS/MS data.
caosgc33d/PANOPLY
Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
caosgc33d/wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly