catavallejos
Group Leader at MRC Human Genetics Unit (Edinburgh) and Fellow of the Alan Turing Institute
MRC Human Genetics Unit (Edinburgh) and @alan-turing-instituteEdinburgh, United Kingdom
Pinned Repositories
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
ImmuneAging2017
Code for Celia and Nils' immune aging project.
R2BGLiMS
R wrapper for a Java Bayesian GLM variable selection package
RegressionBASiCS2017
Analysis code for Nils and Catalina's regression extension
reproducibility-mimic
Evaluating the reproducibility of mortality prediction studies in the MIMIC-III database
RMWreg
Accelerated failure times survival regression using Rate Mixtures of Weibull distributions
scater
Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.
TutorialBASiCS
This tutorial was created using an old version of BASiCS and its code is outdated. This repository is no longer maintained. For up-to-date documentation, please refer to the vignette available at https://github.com/catavallejos/BASiCS or to https://github.com/catavallejos/BASiCS/wiki.
UniversitySurvival
Code provided as supplementary material of "Bayesian survival modelling of university outcomes"
catavallejos's Repositories
catavallejos/BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
catavallejos/TutorialBASiCS
This tutorial was created using an old version of BASiCS and its code is outdated. This repository is no longer maintained. For up-to-date documentation, please refer to the vignette available at https://github.com/catavallejos/BASiCS or to https://github.com/catavallejos/BASiCS/wiki.
catavallejos/UniversitySurvival
Code provided as supplementary material of "Bayesian survival modelling of university outcomes"
catavallejos/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
catavallejos/RMWreg
Accelerated failure times survival regression using Rate Mixtures of Weibull distributions
catavallejos/ImmuneAging2017
Code for Celia and Nils' immune aging project.
catavallejos/R2BGLiMS
R wrapper for a Java Bayesian GLM variable selection package
catavallejos/RegressionBASiCS2017
Analysis code for Nils and Catalina's regression extension
catavallejos/reproducibility-mimic
Evaluating the reproducibility of mortality prediction studies in the MIMIC-III database
catavallejos/scater
Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.
catavallejos/shiny_demo
catavallejos/ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
catavallejos/SomeSlides
This repository includes some of my conference/workshop/seminar slides
catavallejos/SupplementaryFiles
This repository includes supplementary files for some of my publications.
catavallejos/truncnorm
:exclamation: This is a read-only mirror of the CRAN R package repository. truncnorm — Truncated normal distribution
catavallejos/VallejosAndSteel2017-Ecosta-Supp
R code used to produce the results shown in Vallejos and Steel (2017). Incorporating unobserved heterogeneity in Weibull survival models: A Bayesian approach. Econometrics and Statistics
catavallejos/winter-school2016
Bioinformatics workshop on Data management, analysis and visualisation