catavallejos
Group Leader at MRC Human Genetics Unit (Edinburgh) and Fellow of the Alan Turing Institute
MRC Human Genetics Unit (Edinburgh) and @alan-turing-instituteEdinburgh, United Kingdom
Pinned Repositories
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
CompRisks
ImmuneAging2017
Code for Celia and Nils' immune aging project.
R2BGLiMS
R wrapper for a Java Bayesian GLM variable selection package
RegressionBASiCS2017
Analysis code for Nils and Catalina's regression extension
reproducibility-mimic
Evaluating the reproducibility of mortality prediction studies in the MIMIC-III database
RMWreg
Accelerated failure times survival regression using Rate Mixtures of Weibull distributions
TutorialBASiCS
This tutorial was created using an old version of BASiCS and its code is outdated. This repository is no longer maintained. For up-to-date documentation, please refer to the vignette available at https://github.com/catavallejos/BASiCS or to https://github.com/catavallejos/BASiCS/wiki.
UniversitySurvival
Code provided as supplementary material of "Bayesian survival modelling of university outcomes"
catavallejos's Repositories
catavallejos/BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
catavallejos/TutorialBASiCS
This tutorial was created using an old version of BASiCS and its code is outdated. This repository is no longer maintained. For up-to-date documentation, please refer to the vignette available at https://github.com/catavallejos/BASiCS or to https://github.com/catavallejos/BASiCS/wiki.
catavallejos/UniversitySurvival
Code provided as supplementary material of "Bayesian survival modelling of university outcomes"
catavallejos/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
catavallejos/RMWreg
Accelerated failure times survival regression using Rate Mixtures of Weibull distributions
catavallejos/CompRisks
catavallejos/ImmuneAging2017
Code for Celia and Nils' immune aging project.
catavallejos/R2BGLiMS
R wrapper for a Java Bayesian GLM variable selection package
catavallejos/RegressionBASiCS2017
Analysis code for Nils and Catalina's regression extension
catavallejos/reproducibility-mimic
Evaluating the reproducibility of mortality prediction studies in the MIMIC-III database
catavallejos/scater
Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.
catavallejos/shiny_demo
catavallejos/ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
catavallejos/SomeSlides
This repository includes some of my conference/workshop/seminar slides
catavallejos/SupplementaryFiles
This repository includes supplementary files for some of my publications.
catavallejos/truncnorm
:exclamation: This is a read-only mirror of the CRAN R package repository. truncnorm — Truncated normal distribution
catavallejos/VallejosAndSteel2017-Ecosta-Supp
R code used to produce the results shown in Vallejos and Steel (2017). Incorporating unobserved heterogeneity in Weibull survival models: A Bayesian approach. Econometrics and Statistics
catavallejos/winter-school2016
Bioinformatics workshop on Data management, analysis and visualisation