catchambers

catchambers's Stars

• csf-ngs/fastqc

  csf fork of fastqc for usage on selected reads of unaligned bam file

  Language:Java4943

• lehner-lab/DiMSum

  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies

  Language:R286

• torognes/vsearch

  Versatile open-source tool for microbiome analysis

  Language:C++655122

• cancerit/QUANTS

  Language:Python13

• dsebastien/obsidian-dataview-serializer

  Obsidian plugin that gives you the power of Dataview, but generates Markdown, making it compatible with Obsidian Publish, and making the links appear on the Graph.

  Language:TypeScript536

• UB-Mannheim/zotero-ocr

  Zotero Plugin for OCR

  Language:JavaScript53136

• windingwind/zotero-actions-tags

  Customize your Zotero workflow.

  Language:TypeScript1.8k48

• daeh/zotero-markdb-connect

  Zotero plugin that links your Markdown database to Zotero. Jump directly from Zotero Items to connected Markdown files. Automatically tags Zotero Items so you can easily see which papers you've made notes for.

  Language:TypeScript5008

• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k309

• integral-dw/org-superstar-mode

  Make org-mode stars a little more super

  Language:Emacs Lisp50121

• thinkhuman/writingwithemacs

  Tips, Examples, and Resources for Writing with Emacs

  36318

• fniessen/org-html-themes

  Transform your Org mode files into stunning HTML documents in minutes with our Org mode HTML theme. Elevate your productivity and impress your readers! #orgmode #html #theme #productivity #design

  Language:CSS2.2k430

• simonw/datasette

  An open source multi-tool for exploring and publishing data

  Language:Python9.4k671

• bsmith89/compbio-template

  A project template for computational biology, especially bioinformatics

  Language:Makefile71

• rebcabin/tangledown

  Self-contained, one-step literate markdown.

  Language:Python22

• yiming-kang/HTCF_wiki

  This is a wiki for new HTCF users.

  3

• genome/bfx-workshop

  A course on genomics and bioinformatics from WU

  Language:HTML5519

• leonkt/zotero-memento

  Zotero extension that combats link rot by archiving webpages and journal articles.

  Language:JavaScript28714

• PubPeerFoundation/pubpeer_zotero_plugin

  Plugin to show if references in Zotero have PubPeer comments

  Language:TypeScript1382

• LittleDS/Inbreeding-Coefficient-Calculation

  An efficient inbreeding coefficient calculation algorithm implemented with C#

  51

• pgxcentre/genipe

  Genome-wide imputation pipeline

  Language:Python307

• tool-bin/ukbcc

  UKBB Cohort Curator.

  Language:Python42

• clindocu/sas-r

  Import of SAS files into R with associated formats

  Language:SAS103

• Bioconductor/Contributions

  Contribute Packages to Bioconductor

  13433

• StatProofBook/StatProofBookTools

  Tools for The Book of Statistical Proofs

  Language:TeX8110

• kbolton-lab/bolton_Nature_Genetics_CH

  Code for Kelly Bolton Nature Genetics Paper

  Language:R2

• rstudio/cheatsheets

  Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

  Language:TeX5.8k1.8k

• rstudio/rmarkdown

  Dynamic Documents for R

  Language:R2.9k969

• adam-p/markdown-here

  Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

  Language:JavaScript59.6k11.3k

• ESR-NZ/vcf_annotation_pipeline

  A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.

  Language:Python86