Pinned Repositories
advent-of-code-2020
Solutions to Advent of Code 2020 puzzles
CFTRconductance
Implementing a simple model to estimate the conductance of CFTR using data from CFTRimg quenching experiements.
CFTRimg
An image analysis tool to estimate localisation and function of CFTR, the protein which, when mutated, causes cystic fibrosis.
DIAMOnD
DIseAse MODule identification algorithim
grid-spikes
An image analysis pipeline for analysing spikes in calcium activity.
hexCa
Modelling calcium ion dynamics on a fixed hexagonal grid
lesser-house-boids
Simulating flight behaviour of the lesser house fly with an agent-based approach.
multiple-streak-inhibition
Solving a system of ODEs to model interactions preventing the formation of multiple primitive streaks
neighbourhood-streak
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
POMDP
Implementing a RL algorithm based upon a partially observable Markov decision process.
catohaste's Repositories
catohaste/POMDP
Implementing a RL algorithm based upon a partially observable Markov decision process.
catohaste/advent-of-code-2020
Solutions to Advent of Code 2020 puzzles
catohaste/CFTRconductance
Implementing a simple model to estimate the conductance of CFTR using data from CFTRimg quenching experiements.
catohaste/CFTRimg
An image analysis tool to estimate localisation and function of CFTR, the protein which, when mutated, causes cystic fibrosis.
catohaste/DIAMOnD
DIseAse MODule identification algorithim
catohaste/grid-spikes
An image analysis pipeline for analysing spikes in calcium activity.
catohaste/hexCa
Modelling calcium ion dynamics on a fixed hexagonal grid
catohaste/lesser-house-boids
Simulating flight behaviour of the lesser house fly with an agent-based approach.
catohaste/multiple-streak-inhibition
Solving a system of ODEs to model interactions preventing the formation of multiple primitive streaks
catohaste/neighbourhood-streak
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
catohaste/PPI-network
Implementing a bioinformatics pipeline, identifying driver genes in bladder cancer using a network-based approach.
catohaste/spiral
Playing with matplotlib.
catohaste/primitive-streak
A model of protein interactions important in primitive streak formation during chick embryonic development.
catohaste/projecteuler
Solutions to projecteuler problems.
catohaste/science-profile
Code for the website detailing my scientific career.
catohaste/shucks
Web application using Python/Flask, which helps users solve cryptic crosswords.