cauyrd
Associate Professor of cancer genomics and bioinformatics. Looking for postdoc or graduate students joining my lab.
Northwestern UniverstityChicago IL
Pinned Repositories
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
ARSER
Periodicity detection algorithm for evenly spaced circadian gene expression data
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
EgoNet
Subnetwork selection from large-scale biological network based on gene expression data
liftOverBedpe
This is the script to liftover bedpe files
mit-deep-learning-book-pdf
MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville
NgramMotif
Detecting motif enrichment and spatial signatures from TF ChIP-seq data.
ScanIndel
The integrated pipeline for Indel detection
SVfinder
SVfinder is used for detecting genomic rearrangement form DNA-seq data
transIndel
Indel caller for DNA-seq or RNA-seq
cauyrd's Repositories
cauyrd/ScanIndel
The integrated pipeline for Indel detection
cauyrd/transIndel
Indel caller for DNA-seq or RNA-seq
cauyrd/ARSER
Periodicity detection algorithm for evenly spaced circadian gene expression data
cauyrd/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
cauyrd/liftOverBedpe
This is the script to liftover bedpe files
cauyrd/An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
cauyrd/awesome-nanopore
A curated list of awesome nanopore analysis tools.
cauyrd/Badread
a long read simulator that can imitate many types of read problems
cauyrd/biotools
A list of useful bioinformatics resources
cauyrd/books
整理一些书籍 ~
cauyrd/d2l-zh
《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被55个国家的300所大学用于教学。
cauyrd/deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
cauyrd/DeepLearning
深度学习入门教程&&优秀文章&&Deep Learning Tutorial
cauyrd/DeepLearning-500-questions
深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系scutjy2015@163.com 版权所有，违权必究 Tan 2018.06
cauyrd/deeplearning-biology
A list of deep learning implementations in biology
cauyrd/deeplift
Public facing deeplift repo
cauyrd/gsir-te
Getting Started in R -- Tinyverse Edition
cauyrd/karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
cauyrd/llthw-zh
:book: [译] 笨办法学 Linux
cauyrd/lmpythw-zh
:book: [译] 笨办法学 Python · 续
cauyrd/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
cauyrd/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
cauyrd/plain-academic
A truly simple website template for academics
cauyrd/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
cauyrd/pytorch-handbook
pytorch handbook是一本开源的书籍，目标是帮助那些希望和使用PyTorch进行深度学习开发和研究的朋友快速入门，其中包含的Pytorch教程全部通过测试保证可以成功运行
cauyrd/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
cauyrd/sequenceTubeMap
displays multiple genomic sequences in the form of a tube map
cauyrd/sg-nex-data
cauyrd/statistic
collecting books, papers and docs.
cauyrd/The-world-of-faculty
resources for faculty