cauyrd
Associate Professor of cancer genomics and bioinformatics. Looking for postdoc or graduate students joining my lab.
Northwestern UniverstityChicago IL
Pinned Repositories
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
ARSER
Periodicity detection algorithm for evenly spaced circadian gene expression data
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
EgoNet
Subnetwork selection from large-scale biological network based on gene expression data
liftOverBedpe
This is the script to liftover bedpe files
mit-deep-learning-book-pdf
MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville
NgramMotif
Detecting motif enrichment and spatial signatures from TF ChIP-seq data.
ScanIndel
The integrated pipeline for Indel detection
SVfinder
SVfinder is used for detecting genomic rearrangement form DNA-seq data
transIndel
Indel caller for DNA-seq or RNA-seq
cauyrd's Repositories
cauyrd/git-workflow
Tool to visualize your git workflow, in a pretty graph
cauyrd/HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
cauyrd/LSPR
Periodicity detection algorithm for unevenly spaced circadian gene expression data
cauyrd/poverlap
significance testing over interval overlaps
cauyrd/sv-annotate
A small pipeline to annotate and filter candidate structural variation calls
cauyrd/svsim
Simulation toolbox for structural variations.