Pinned Repositories
bengen
Docker based Multiple sequence aligners benchmark prototype
docker-benchmarks
A benchmarks of genomic pipelines running in Docker containers
kallisto-nf
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
lncRNA-Annotation-nf
A Nextflow lncRNA Annotation Pipeline based on STAR, Cufflinks and FEELnc
msa-af2-nf
Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
nf-phdcourse19
Nextflow training material for CRG PhD course 2019
pergola
A tool for the visualization and analysis of longitudinal behavioral data
piper-nf
RNA mapping pipeline
tcoffee
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
unistrap
Reliability measure of inferred phylogenetic trees
Notredame Lab's Repositories
cbcrg/tcoffee
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
cbcrg/msa-af2-nf
Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
cbcrg/nf-phdcourse19
Nextflow training material for CRG PhD course 2019
cbcrg/ampa-nf
Fast automated prediction of protein antimicrobial regions
cbcrg/pergola
A tool for the visualization and analysis of longitudinal behavioral data
cbcrg/nf-phdcourse20
Nextflow training material for CRG PhD course 2020
cbcrg/nf-benchmark
cbcrg/nf-phdcourse21
Nextflow training material for CRG PhD course 2021
cbcrg/paralogs-nf
Nextflow pipeline for applying the supermatrix and supertree phylogenetic reconstruction methods on paralogs datasets
cbcrg/phecomp
cbcrg/alphafold
CBCRG fork of the open source code for AlphaFold for nf-core/proteinfold
cbcrg/tcoffee.org
Repository to host tcoffee.org website content
cbcrg/celegans-pergola-reproduce
C. elegans dataset Pergola paper analysis
cbcrg/class-modules
A subset of curated nf-core/module and module templates
cbcrg/coordinate_projection
cbcrg/dpa-analysis
Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
cbcrg/lab_nxf_configs
Repository to share nextflow configurations used by the lab
cbcrg/melanogaster-pergola-reproduce
D. melanogaster dataset Pergola paper analysis
cbcrg/mouse-pergola-reproduce
Mouse dataset Pergola paper analysis
cbcrg/multiplesequencealign
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
cbcrg/nf-class
Wrapper around nf-core/tools to work with class-modules
cbcrg/nf-phdcourse22
cbcrg/open-data-registry
A registry of publicly available datasets on AWS
cbcrg/pergola-reproduce
Wrapper of the three repositories reproducing Pergola paper analysis
cbcrg/reportho
nf-core pipeline for ortholog finding and analysis
cbcrg/rnaseq-nf
A proof of concept of RNAseq pipeline
cbcrg/stimulus
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
cbcrg/TANGO1
codes used so far for TANGO1 projext
cbcrg/tcoffee-nf
A DSL2 nextflow pipeline to run T-Coffee popular modes
cbcrg/tcoffee-server
T-Coffee web server