cbcrg/tcoffee

Issues

• "code" and "decode" function modifies branch lengths and bootstrap values

  #67 opened 4 months ago by kr3118
  1

• t_coffee Needed by T-COFFEE Could not be found

  #66 opened 5 months ago by alephreish
  11

• REGRESSIVE vs default: different behaviour when printing to STDOUT

  #65 opened 8 months ago by lrauschning
  0

• Error in the installation of m-coffee

  #64 opened 8 months ago by claceline
  3

• PSICoffee - WARNING: [ncbiblast_lwp.pl] failed to produce xml output

  #36 opened 9 months ago by AlbanMariette
  3

• Build fails with strict-aliasing violations.

  #60 opened 9 months ago by eli-schwartz
  3

• Pin new releases for conda

  #54 opened 2 years ago by matthdsm
  7

• T-Coffee installer tarball changed

  #57 opened a year ago by smoors
  8

• tag v11

  #4 opened 2 years ago by dunn
  4

• Please keep tags in sync with your releases

  #12 opened 2 years ago by tillea
  1

• The limit of input sequence number

  #8 opened 2 years ago by jmchangTW
  2

• Error building tcoffee with clang

  #7 opened 2 years ago by slacka
  1

• Stable download link doesn't work

  #55 opened 2 years ago by pegetive
  2

• MAX_N_PID should be 4194304 on 64bit machines

  #27 opened 5 years ago by merkys
  10

• How to set MAX N PID

  #47 opened 3 years ago by davidfstein
  2

• t_coffee segmentation fault in biopython test cases

  #56 opened 2 years ago by emollier
  2

• Website tcoffee.org is unavailable (Gateway Timeout)

  #51 opened 3 years ago by balling-dev
  3

• please do not edit ~/.bashrc, etc on install

  #50 opened 3 years ago by diekhans
  0

• fmcoffee use 1 core

  #49 opened 3 years ago by Sanrrone
  2

• Stuck at 100% - tcoffee regressive mode

  #48 opened 3 years ago by pentamorfico
  0

• Why creating file in a non temp directory

  #45 opened 3 years ago
  0

• TCS provides different outputs depending on the number of CPUs

  #44 opened 4 years ago by apcamargo
  1

• Running Expresso on local computer (BLAST_FAILURE)

  #39 opened 4 years ago by tubiana
  2

• Expresso failed, X-ray and NMR structure templates?

  #41 opened 4 years ago by KamillaOJ
  3

• error BLAST Templates

  #40 opened 4 years ago by adriludwig
  2

• Linux installers installs plugins with incorrect permissions

  #38 opened 4 years ago by MartinGuehmann
  0

• How to use PSI-Coffee on my own computer?

  #32 opened 4 years ago by kuangmeng
  1

• TCS scoring results not consistent between local and web TCS - gaps management - T-coffee 13.41.139.ca96b3d

  #35 opened 4 years ago by AlbanMariette
  2

• Errors with mcoffee

  #34 opened 4 years ago by moibernabeu
  2

• Unable to use t_coffee on large datasets

  #33 opened 4 years ago by lalalagartija
  2

• printf_system :: should have debug enabled as other printf_system* functions

  #31 opened 4 years ago by EricDeveaud
  0

• t_coffee -clean :: inconsistency

  #30 opened 4 years ago by EricDeveaud
  0

• lib/util_lib/util.c should use PERL_HEADER value

  #29 opened 4 years ago by EricDeveaud
  0

• use env var TMPDIR if defined

  #28 opened 4 years ago by EricDeveaud
  0

• Possible mistakes in if/then syntax

  #5 opened 5 years ago by dmacks
  1

• --ERROR: MAX_N_PID exceded -- Recompile changing the value of MAX_N_PID

  #23 opened 5 years ago by WellJoea
  2

• Error when combining three alignments

  #13 opened 5 years ago by liubovch
  1

• -output flag not supported when using -reg

  #19 opened 5 years ago by edgano
  0

• Filename too long using ALN_DUMP

  #18 opened 5 years ago by edgano
  0

• Varies result while input FASTA vs STDIN FASTA

  #9 opened 8 years ago by anilthanki
  0

• T-Coffee misinterpret an input file starting with a "A"

  #3 opened 10 years ago by pditommaso
  1

• Spaces in fully qualified path to executable cause t_coffee to fail

  #2 opened 10 years ago by nivekkagicom
  1