cchlanger

Scientist interested in bringing computer science, software development, and agile project management best practices into life sciences.

IMBA - Institute of Molecular Biotechnology of the OeAW

Pinned Repositories

bcl2fastq_docker
Language:Dockerfile0 0 00
cooler_ontad
Tool that wraps OnTAD to work with the cooler ecosystem.
Language:Python6 1 11
linescan
Language:Python0 1 00
linescan_tool
A tool that creates a line scan and performs peak detection and alignment based on FIJI ROIs.
Language:Jupyter Notebook1 1 00
mmHiC
Michael's Method HiC Pipeline
Language:Dockerfile01
neubias_ts2_groupe4
Groupe 4 project of the Defragmentation Training School 2 (NEUBIAS Academy)
0 2 00
playground_droplet_measurement
Quantifying a droplet fusion event.
Language:Jupyter Notebook0 1 00
hicognition
A visual exploration and hypothesis testing tool for 3D genomics
Language:Python13 1 222
scshic_docker
Container with tools to analyse scsHi-C data.
Language:Dockerfile0 1 01
scshic_pipeline
scsHi-C preprocessing Nextflow pipeline
Language:Groovy5 1 00

cchlanger's Repositories

cchlanger/cooler_ontad
Tool that wraps OnTAD to work with the cooler ecosystem.
Language:Python6 1 11
cchlanger/linescan_tool
A tool that creates a line scan and performs peak detection and alignment based on FIJI ROIs.
Language:Jupyter Notebook1 1 00
cchlanger/bcl2fastq_docker
Language:Dockerfile0 0 00
cchlanger/linescan
Language:Python0 1 00
cchlanger/mmHiC
Michael's Method HiC Pipeline
Language:Dockerfile01
cchlanger/neubias_ts2_groupe4
Groupe 4 project of the Defragmentation Training School 2 (NEUBIAS Academy)
0 2 00
cchlanger/playground_droplet_measurement
Quantifying a droplet fusion event.
Language:Jupyter Notebook0 1 00
cchlanger/python-bookclub
Language:Python0 1 00
cchlanger/TADtree
Language:Python0 0 00