ccrobertson
I am a postdoctoral fellow at the University of Michigan and the National Human Genome Research Institute @ParkerLab @CollinsLabBioComp
Bethesda, MD
Pinned Repositories
aa-immunochip
T1D ImmunoChip association analysis in African American subjects
ATACseq-NextFlow
coloc
Repo for the R package coloc
goblue
Learning to use github together!
nf_scrna_qc
Single cell RNA-seq quality control, transcription profile clustering & cell-type assignment
poems
t1d-immunochip-2020
Analysis and supplemental data for ImmunoChip analysis of type 1 diabetes
T1D_U01
Analysis scripts for 10X snATAC-seq and snRNA-seq multiome data generated for the T1D U01 collaborative project between Stephen Parker and Shuibing Chen labs
bds_hackathon
bdshack19
Coordinating the 2019 Biomedical Data Science Hackathon at UVA
ccrobertson's Repositories
ccrobertson/t1d-immunochip-2020
Analysis and supplemental data for ImmunoChip analysis of type 1 diabetes
ccrobertson/T1D_U01
Analysis scripts for 10X snATAC-seq and snRNA-seq multiome data generated for the T1D U01 collaborative project between Stephen Parker and Shuibing Chen labs
ccrobertson/goblue
Learning to use github together!
ccrobertson/aa-immunochip
T1D ImmunoChip association analysis in African American subjects
ccrobertson/ATACseq-NextFlow
ccrobertson/coloc
Repo for the R package coloc
ccrobertson/nf_scrna_qc
Single cell RNA-seq quality control, transcription profile clustering & cell-type assignment
ccrobertson/poems
ccrobertson/pepatac
A modular, containerized pipeline for ATAC-seq data processing
ccrobertson/PublicData
Processing and analysis of publicly available molecular profiling data sets
ccrobertson/RNAseq-NextFlow
ccrobertson/SCAFE
Single Cell Analysis of Five'Ends
ccrobertson/snakemake-genotype-imputation
General pipeline for imputation using TOPMed Imputation Server or Michigan Imputation Server API. Assumes input genotypes are on hg19.
ccrobertson/snakemake-genotype-qc
General pipeline for QC of a genotyping arrays. Note, the ancestry inference step merges with 1KG reference on rsids (not chr:pos), so is build-agnostic.
ccrobertson/snakemake-multiome-preprocessing
Automates setup of configs and execution of preprocessing steps for a multiome library.
ccrobertson/snATACseq-NextFlow
ccrobertson/SNIPar
robust GWAS using family data
ccrobertson/snRNAseq-NextFlow
ccrobertson/souporcell
Clustering scRNAseq by genotypes
ccrobertson/utility_scripts