cdanielmachado/reframed

Issues

• Use `set()` instead of `[]` for `var_ids` in Solver

  #28 opened 4 months ago by Prunoideae
  2

• Transcriptomics usage

  #26 opened 9 months ago by FelipeMelis
  4

• itle: Difficulty Performing SteadyCom Analysis on Genome-Scale Community Model Created with CarveMe

  #27 opened 5 months ago by wtscott31
  3

• Bug report: cannot import name 'compress' from 'scipy'

  #25 opened 9 months ago by Hocnonsense
  2

• Adding reactions

  #24 opened a year ago by amarsh26
  0

• Annotations not properly parsed

  #21 opened a year ago by sulheim
  0

• Question about loading models

  #20 opened a year ago by amarsh26
  0

• set_gpr_association does not remove genes

  #18 opened 2 years ago by IdunBurgos
  0

• questions about Environment class

  #17 opened 2 years ago by amarsh26
  2

• Update package on PyPI

  #16 opened 2 years ago by yaccos
  0

• 'marge' function doesn't work when trying to repeat modeling in Shechter et al., 2021

  #14 opened 2 years ago by Guan06
  1

• Infeasible or Unbounded in reframed while solvable by cobrapy

  #13 opened 2 years ago by ccshao
  0

• Provide sensible error handling for FVA when original problem is infeasible

  #12 opened 3 years ago by yaccos
  0

• Solver disregards previous set objectives

  #11 opened 3 years ago by yaccos
  0

• `solver_instance()` should keep the objective from the parent model

  #10 opened 3 years ago by yaccos
  0

• Declare `reframed.solvers.solver.Solver` an abstract base class

  #9 opened 3 years ago by yaccos
  1

• Having class `Status` in top-level API would be useful

  #8 opened 3 years ago by yaccos
  3

• essential_genes and essential_reactions extra arguments and outputs

  #5 opened 3 years ago by EmanuelGoncalves
  0

• load gene annotations in load_cbmodel()

  #4 opened 3 years ago by EmanuelGoncalves
  0

• Check for fbc plugin

  #3 opened 3 years ago by JosuaCarl
  2

• Models not growing anymore after update

  #2 opened 3 years ago by silvtal
  1

• Objective is none

  #1 opened 4 years ago by pbelmann
  3