cdeitrick/Lolipop

Muller diagrams excel at visualizing evolutionary dynamics of a population over time. A common use case, and the intended use case during development, describes the abundance and succession of genotypes within a population derived from sequencing data from samples at specified timepoints. This provides a useful method of quickly discerning the evolutionary relationship between genotypes seen in a population and how this changes over time.

PythonMIT

Issues

errors when running lollipop lineage
#71 opened 9 months ago
0
TypeError: can only concatenate str (not "int") to str
#70 opened a year ago
0
FileNotFoundError: [Errno 2] No such file or directory: 'seaborn-white'
#69 opened a year ago
0
Total frequency larger than 100% of the last time point, inaccurate genotype inference
#68 opened a year ago
0
-f flag does not work in latest version
#66 opened 4 years ago
1
Table .edges.tsv no longer prints out in a format that can be directly imported into r and used to plot with ggmuller
#64 opened 4 years ago
1
Scripts
#63 opened 4 years ago
1
Lolipop fails when less than two mutations are present in the population.
#62 opened 4 years ago
0