This repository contains supporting data for:
- Campbell, CL, Bhérer, C, Morrow, BE, Boyko, AR, & Auton, A. A Pedigree-Based Map of Recombination in the Domestic Dog Genome. G3: GENES, GENOMES, GENETICS; November 1, 2016; vol. 6 no. 11 3517-3524; doi:10.1534/g3.116.034678
- Column descriptions for dog_CO-calls.txt
- childID : identifier for child
- paternalID : identifier for father
- maternalID : identifier for mother
- recomb.type : 0 for female transmissions, 1 for male
- chr : chromsome in canFam3.1
- pos.lower : lower bound of crossover in canFam3.1 coordinates
- pos : upper bound of crossover in canFam3.1 coordinates
- pRecomb : probability of recombination, given by duoHMM
- mID : unique "meiosis ID" for each transmission in the format of "m<parentID>-<childID>"
- Column descriptions for each genetic map within dog_genetic_maps.tar.gz
- chr : chromosome in canFam3.1
- pos : position in canFam3.1 coordinates
- rate : recombination rate in cM/Mb
- cM : cumulative map position in centiMorgans
- Genotype data, including pedigree information for 237 dogs is included in PLINK format within dog_genotype_data.tar.gz