Pinned Repositories
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
SCENICprotocol
A scalable SCENIC workflow for single-cell gene regulatory network analysis
arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
auto_transcode
Monitor a directory for new video files ending in (mov|MOV), transcode and normalize audio, moving the output to a new location.
bap
Bead single-cell atac processing
bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
CGmix
Crossover and Gene conversion detection from adMIXed population genetic data
dog_recombination
Supporting data for doi:10.1534/g3.116.034678: A Pedigree-Based Map of Recombination in the Domestic Dog Genome
Thesis
"Patterns of crossing over and gene conversion in meiotic recombination." PhD Thesis: May 31, 2016
vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
cflerin's Repositories
cflerin/CGmix
Crossover and Gene conversion detection from adMIXed population genetic data
cflerin/arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
cflerin/auto_transcode
Monitor a directory for new video files ending in (mov|MOV), transcode and normalize audio, moving the output to a new location.
cflerin/bap
Bead single-cell atac processing
cflerin/bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
cflerin/dog_recombination
Supporting data for doi:10.1534/g3.116.034678: A Pedigree-Based Map of Recombination in the Domestic Dog Genome
cflerin/Thesis
"Patterns of crossing over and gene conversion in meiotic recombination." PhD Thesis: May 31, 2016
cflerin/bioInfResources
A collection of random bioinformatics resources
cflerin/boggleSolver
R script to solve Boggle boards.
cflerin/callCrossoversFromMerlinFlow
Identify recombination crossovers from MERLIN's haplotyping flow output.
cflerin/interference
MATLAB code for estimating crossover interference under the Housworth-Stahl model.
cflerin/nf-core-scenic
A Nextflow pipeline to perform SCENIC analysis on single-cell RNAseq data
cflerin/nf-master
cflerin/nf-module
cflerin/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
cflerin/readthedocs.org
The source code that powers readthedocs.org
cflerin/scanpy-images
Docker and Singularity images for Scanpy
cflerin/startup
dotfiles and configuration for new system installs