Pinned Repositories
awesome-ggplot
A curated list of ggplot related R packages inspired by Awesome Sysadmin
staries
The *ies. A series of <star>-ies util snippets, scripts or templates that I use day to day.
valibam
Minimal nextflow pipeline to check integrity of BAM files with various tools and to generate the checksum (md5) of each files.
action-cloudos-cli
:octocat: Github action to programmatically interact with the Lifebit CloudOS platform using the official API client cloudos-cli
cloudos
cloudos: An R package for the Lifebit CloudOS Platform
cloudos-cli
Python library and Command Line Interface for interacting with Lifebit Applications
GenomeChronicler
Long-Read-Proteogenomics
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
sbas
CloudOS Digital Research Environment
cgpu's Repositories
cgpu/staries
The *ies. A series of <star>-ies util snippets, scripts or templates that I use day to day.
cgpu/action-custom-action
Custom action creation example
cgpu/add-branch-protection-rules
Programmatically add branch protection rules using gh cli
cgpu/action-hadolint
Run hadolint with reviewdog 🐶
cgpu/awesome-hugo-themes
cgpu/cgpu
cgpu/demo-nf
cgpu/demo-nf-2
cgpu/demo-nf-nf
cgpu/demo-test
cgpu/exomiser-test-nf
cgpu/frankenspammer
A stampede of processes at your fingertips
cgpu/hello-github-actions
cgpu/homenearthetube
cgpu/JiraPython
cgpu/Long-Read-Proteogenomics
A workflow for Delineating the Human Proteome at Isoform Resolution by Integration of Long-read Proteogenomics and Mass Spectrometry.
cgpu/new-repo
cgpu/nextflow
Nextflow pipelines
cgpu/nextflow-pipeline
cgpu/patterns
A curated collection of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html
cgpu/R_vs_excel_workshop
cgpu/repository-mirroring-action
A GitHub Action for mirroring a repository to another repository
cgpu/rnatoy
A proof of concept RNA-Seq pipeline with Nextflow
cgpu/slackapps-repository
cgpu/splicing-pipelines-nf
Repository for the Anczukow-Lab splicing pipeline
cgpu/template-nf
cgpu/templates
A library for generating template files
cgpu/test-action-cloudos-cli
Github action to programmatically launch Lifebit CloudOS jobs using the official API client cloudos-cli
cgpu/test-exomiser-nf
cgpu/test_stage_lustre
mini pipeline to test staging performance on lustre