Pinned Repositories
awesome-ggplot
A curated list of ggplot related R packages inspired by Awesome Sysadmin
staries
The *ies. A series of <star>-ies util snippets, scripts or templates that I use day to day.
valibam
Minimal nextflow pipeline to check integrity of BAM files with various tools and to generate the checksum (md5) of each files.
action-cloudos-cli
:octocat: Github action to programmatically interact with the Lifebit CloudOS platform using the official API client cloudos-cli
cloudos
cloudos: An R package for the Lifebit CloudOS Platform
cloudos-cli
Python library and Command Line Interface for interacting with Lifebit Applications
GenomeChronicler
Long-Read-Proteogenomics
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
sbas
CloudOS Digital Research Environment
cgpu's Repositories
cgpu/awesome-ggplot
A curated list of ggplot related R packages inspired by Awesome Sysadmin
cgpu/12-12-2019-ggplot2-workshop
Materials from the ggplot2 workshops as part of the Warsaw Meeting of Enthusiasts of R
cgpu/alfie
cgpu/archive-repo
cgpu/BioBombe
BioBombe: Sequentially compressed gene expression features enhances biological signatures
cgpu/BSS2020
Bioinformatics Summer School 2020
cgpu/calour
exploratory and interactive microbiome analyses based on heatmaps
cgpu/cellcounter
cellCounter: Image Processing Project for the MSc Bioinformatics Elective course
cgpu/ConceptPrevalence
A package to calculate the counts of the standard and source concepts in an OMOP CDM and extract the current version of the mappings used.
cgpu/covbench
cgpu/dotfiles
my .bashrc and related files
cgpu/git-github-playground
A repo for testing and practicing git(hub) related skills and tasks
cgpu/holepunch-tinyverse
cgpu/Interactive-Reporting-In-Jupyter-Notebook
This sample shows how to create a Jupyter Notebook with the interactive pivot table and pivot charts components. This approach can be used for data analysis and data visualization purposes.
cgpu/iscrape
A basic web scrapper for Instagram
cgpu/jax-jupyter
Jackson Labs hands-on workshop material for using Jupyter Notebooks on CloudOS
cgpu/jupytemplate
Templates for jupyter notebooks
cgpu/lifebitCloudOSDREgtex
Supplementary repo to attach the gtex.rds archive retrieved via yarn::downloadGTEXv8()
cgpu/minimo
Minimo - Minimalist theme for Hugo
cgpu/PGP-UK-sarek
cgpu/plumberAPI
Template for a Plumber API with load balancing
cgpu/ProjectAsPackage
Demonstration of the use of an R package to organize a data analysis project
cgpu/qc-nf
Template Nextflow pipeline to run quality control (QC) on FastQ files using FastQC & generate an output HTML report using MultiQC
cgpu/research-compendium-website
A template for creating a research compendium for a website interface
cgpu/splicing-marina
cgpu/sradownloader
A pipeline to download raw data from SRA
cgpu/teaching_ml
repository of resources for teaching Machine Learning
cgpu/xcmsrocker
Rocker image for metabolomics data analysis
cgpu/yarn
YARN: Yet Another RNa-seq package
cgpu/zammad-docker-prod
Productive Zammad Installation