cgroza
Scientist studying human genetic diversity using genome graphs. PhD McGill University. #Emacs user. Bring back #Lisp.
Montreal, Quebec, Canada
Pinned Repositories
BarcodeAsm
bifrost_jaccard
Compute jaccard similarity matrix between colors in a bifrost compacted colored de Bruijn graph.
dotfiles
Emacs-apt
Apt packager interface for emacs.
gEcrit
gEcrit is a Python IDE. Its focus is on simplicity and ease of use. It is fast and lightweight. It features Python indentation, line numbers, code folding, syntax highlighting, shell access, code completion, a program runner, a source browser, indentation guides, a white space indicator, autosaving, an edge line, multiple tabs, printing, jumping to a specific line, word searching, word replacement, zooming undo/redo, pastebin.com code submission, Python syntax checking, the ability to change the indentation of many lines at once, autocompletiton,file tree browser,and bad brace checking.
GraffiTE
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
KU_tutorial_2023
panmethyl
Map Pacbio methylation data to genome graphs.
SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
wx-Youtube
A youtube video downloader.
cgroza's Repositories
cgroza/Emacs-apt
Apt packager interface for emacs.
cgroza/gEcrit
gEcrit is a Python IDE. Its focus is on simplicity and ease of use. It is fast and lightweight. It features Python indentation, line numbers, code folding, syntax highlighting, shell access, code completion, a program runner, a source browser, indentation guides, a white space indicator, autosaving, an edge line, multiple tabs, printing, jumping to a specific line, word searching, word replacement, zooming undo/redo, pastebin.com code submission, Python syntax checking, the ability to change the indentation of many lines at once, autocompletiton,file tree browser,and bad brace checking.
cgroza/HsRegex
Haskell regular expresion engine.
cgroza/evil-html-mode
Spacemacs confguration layer that adds spacemacs style bindings to Emacs' HTML-mode.
cgroza/LensesManager
Tool for managing Unity Lenses.
cgroza/MachineLearning
Experimentation with machine learning algorithms such as K Nearest Neighbours, Support Vector Machines and Neural Networks.
cgroza/Mineserver
Minecraft server manager.
cgroza/qq_plot_gg
qqplot with ggplot
cgroza/xmlgetf
Simple tool to extract data from XML fields.
cgroza/COMP303_Minis
cgroza/QLSC600_M2A2
GWAS on admixed populations
cgroza/QLSC_M4A2
cgroza/bamFasta
Replace FASTA intervals with the sequence of aligned reads from SAM/BAM.
cgroza/clj-chess-sumamry
Creates summaries of chess games.
cgroza/COMP-551-P3
cgroza/COMP551_P1
cgroza/COMP551_P2
cgroza/COMP551_P4
cgroza/COMP598-TWAS-PRS
cgroza/COMP598_proj
cgroza/goodreads-clj
Goodreads API wrapper for Clojure.
cgroza/MACS
MACS -- Model-based Analysis of ChIP-Seq
cgroza/makeChains
Chain file generation script for Mammouth cluster.
cgroza/mastering-shiny
Mastering Shiny: a book
cgroza/QLS_Li_Lab
cgroza/QLSC600-ODEs
cgroza/SeqAlign
Experimentation with bioinformatics.
cgroza/templates
Repository to store templates for Markdown, Org, Latex etc ...
cgroza/ultrabubble_paths
Function to work with ultrabubble paths in vg graphs.
cgroza/vcf2diploid
personal genome constructor