Pinned Repositories
asdpex
charite.github.io
Charité Computational Biology Website
denovocaller
Denovo Variation Caller for simple familie trios (mother, father, affected child)
hyperSMURF
Weka implementation of hyperSMURF using EasyEnsemble and SMOTE
jannovar
Annotation of VCF variants with functional impact and from databases (executable+library)
jannovar_example_app
Minimal Maven application using Jannovar
jannovar_tutorial
Jannovar Tutorial Applications
ngspipeline
Our NGS Pipeline using Nextflow
Q
Q ChIP-seq peak caller
topodombar
Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries
Computational Biology Berlin's Repositories
charite/jannovar
Annotation of VCF variants with functional impact and from databases (executable+library)
charite/Q
Q ChIP-seq peak caller
charite/asdpex
charite/ngspipeline
Our NGS Pipeline using Nextflow
charite/charite.github.io
Charité Computational Biology Website
charite/denovocaller
Denovo Variation Caller for simple familie trios (mother, father, affected child)
charite/hyperSMURF
Weka implementation of hyperSMURF using EasyEnsemble and SMOTE
charite/jannovar_example_app
Minimal Maven application using Jannovar
charite/jannovar_tutorial
Jannovar Tutorial Applications
charite/topodombar
Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries
charite/chipseqknime
KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/
charite/hyperSMURF-tutorial
Tutorial how you can the hyperSMURF algorithm in your Java application
charite/weka-GWAVA
Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832