-d hg38/refseq not found
pnrobinson opened this issue · 1 comments
pnrobinson commented
https://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/GFF/ref_GRCh38.p12_top_level.gff3.gz is not present.
$ java -jar jannovar-cli-0.31.jar download -d hg38/refseq
Options
JannovarDownloadOptions [downloadDir=data, getDataSourceFiles()=[bundle:///default_sources.ini], isReportProgress()=true, getHttpProxy()=null, getHttpsProxy()=null, getFtpProxy()=null, geneIdentifiers=[], outputFile=]
Downloading/parsing for data source "hg38/refseq"
INFO Downloading data...
INFO Downloading https://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/GFF/ref_GRCh38.p12_top_level.gff3.gz
INFO Creating directory data/hg38/refseq
ERROR: ERROR: Problem downloading file: https://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/GFF/ref_GRCh38.p12_top_level.gff3.gz
de.charite.compbio.jannovar.datasource.FileDownloadException: ERROR: Problem downloading file: https://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/GFF/ref_GRCh38.p12_top_level.gff3.gz
(...)
pnrobinson commented
updated to latest version and now this is working, all is ok