chasemc/IDBacApp

Issues

• Issue getting IDBac to run in R

  #162 opened 7 months ago by powerhelix
  1

• Will not process data

  #153 opened 2 years ago by PaigeBanks
  11

• Problem creating bigger dendrograms / crash

  #159 opened 2 years ago by nici7
  1

• Issue getting updates to load

  #157 opened 2 years ago by ehotze
  5

• Sample data

  #158 opened 2 years ago by chasemc
  1

• method.md link in README.md is broken

  #154 opened 2 years ago by mwang87
  2

• binnR errors if a sample contains only one peak

  #123 opened 2 years ago by chasemc
  0

• Trouble picking colors in "Incorporate info about samples"

  #133 opened 2 years ago by grimcynthia
  2

• Plotly graphs sample IDs are offset on hover

  #134 opened 2 years ago by chasemc
  0

• IDBac does not load: "Error in evaluating the argument 'pool' in selecting a method for function 'poolCheckout'"

  #149 opened 4 years ago by davidshumway
  1

• Can IDBac label each node?

  #148 opened 4 years ago by Furaxixi
  1

• Problems with combining experiments

  #131 opened 5 years ago by grimcynthia
  4

• Reset converters after conversion

  #140 opened 5 years ago by chasemc
  0

• Add "apply" button to "adjust lines/labels"

  #139 opened 5 years ago by chasemc
  0

• Most of this should probably be in SQL to be faster/more efficient

  #138 opened 5 years ago by chasemc
  0

• Mirror plots not helpful when spectra intensities are drastically different

  #137 opened 5 years ago by chasemc
  0

• Crash on "Color by Dendrogram Labels"

  #135 opened 5 years ago by grimcynthia
  2

• Crash on MAN if no peaks in sample

  #136 opened 5 years ago by chasemc
  0

• Samples removed despite peaks present in protein run

  #132 opened 5 years ago by grimcynthia
  3

• Raw Data Conversion Not Operating

  #124 opened 5 years ago by szambrzy
  6

• IDBac text file analysis

  #127 opened 5 years ago by twincacca
  8

• Small Molecule MAN only appears for some samples when dealing with 2 experiments

  #129 opened 5 years ago by grimcynthia
  1

• Avoid IO when parsing Microtyper

  #130 opened 5 years ago by chasemc
  1

• Microtyper conversion failing

  #128 opened 5 years ago by chasemc
  0

• Catch if MSConvert is found but not doing anything.

  #126 opened 6 years ago by chasemc
  0

• 'No missing ID's' when there are missing IDs

  #125 opened 6 years ago by chasemc
  0

• Saving dendrogram as svg

  #121 opened 6 years ago by chasemc
  0

• Append metadata to strain name

  #120 opened 6 years ago by chasemc
  0

• "Save MAN as SVG" works but doesn't append filetype-".svg"

  #111 opened 6 years ago by chasemc
  2

• Can launch IDBac, but repeatedly crashes

  #115 opened 6 years ago by grimcynthia
  3

• msconvert not found, msconvert.exe not found

  #119 opened 6 years ago by chasemc
  1

• IDBac greys during spectra processing and fails

  #118 opened 6 years ago by chasemc
  0

• Chase hasn't updated the version number

  #114 opened 6 years ago by chasemc
  0

• Impractically large ppm tolerances can crash binnR

  #109 opened 6 years ago by chasemc
  0

• MAN crashes if no samples selected in dendrogram

  #104 opened 6 years ago by chasemc
  0

• "Error: unable to start png() device"

  #101 opened 6 years ago by chasemc
  0

• "Error:figure margins too large"

  #102 opened 6 years ago by chasemc
  0

• AutoFlex issue

  #100 opened 6 years ago by AlexanderWulf
  3

• Peak binning with large number of spectra

  #96 opened 6 years ago by davidshumway
  1

• Small molecule PCA plot randomly dissapears

  #74 opened 6 years ago by chasemc
  0

• When creating DB from previous exp, check DB already in use

  #47 opened 6 years ago by chasemc
  0

• Add support for "Microtyper" txt input

  #49 opened 6 years ago by chasemc
  1

• "Error: only 0's may be mixed with negative subscripts"

  #44 opened 6 years ago by chasemc
  1

• Breaks reactivity of the dendrogram modifying buttons

  #52 opened 6 years ago by chasemc
  1

• Re-add in conversion from Bruker flex instruments

  #50 opened 6 years ago by chasemc
  0

• Add more options for dendrogram modification

  #45 opened 6 years ago by chasemc
  0

• Re-add in distance algorithms other than cosine

  #46 opened 6 years ago by chasemc
  1

• Option to add metadata column

  #41 opened 6 years ago by chasemc
  2

• Sample that are invalid filenames don't work

  #43 opened 6 years ago by chasemc
  2

• Add instructions to IDBac for submitting error log

  #40 opened 6 years ago by chasemc
  0