chasemc
Computation and Informatics in Biology and Medicine (CIBM) Postdoc http://www.cibm.wisc.edu/
@KwanLab Chicago
Pinned Repositories
advent-of-code
demoApp
electricShine
Create Standalone Installable Shiny Apps
IDBacApp
A MALDI Mass Spectrometry Bioinformatics Platform
mzfinder
Search LC-MS/MS Precursors against npatlas https://www.npatlas.org
npPapers
Collection of Natural Products Papers (mostly for intro)
uw-scripts
Random helper scripts written while postdoc'ing at UW-Madison
sgnf
SocialGene's Nextflow Pipeline
sgpy
Python package for creating and interacting with graph databases of protein domains and their genome coordinates
chasemc's Repositories
chasemc/electricShine
Create Standalone Installable Shiny Apps
chasemc/IDBacApp
A MALDI Mass Spectrometry Bioinformatics Platform
chasemc/demoApp
chasemc/npPapers
Collection of Natural Products Papers (mostly for intro)
chasemc/uw-scripts
Random helper scripts written while postdoc'ing at UW-Madison
chasemc/advent-of-code
chasemc/ai-resources
Personal repo to keep track of things
chasemc/antismash
antiSMASH
chasemc/autometa_test_data
Minimal data for testing the Autometa workflow
chasemc/bash_scripts
Random bash scripts
chasemc/biocatalysis-model
RXN for biochemical reactions
chasemc/chasemc
chasemc/chasemc.github.io
My Website
chasemc/chtc_scripts
chasemc/computational_biology
course material
chasemc/dry-guide
The Guide to Computing in the Andersen Lab
chasemc/job-grant-statements
Successful Job Applications and Grants
chasemc/learngenomics.dev
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
chasemc/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
chasemc/paperpile-backup
chasemc/presentations
chasemc/ProteinCartography
a pipeline to build similarity maps of protein space
chasemc/resume
Chase's CV/Resume
chasemc/stamps2023
Materials for the STAMPS 2023 course at the MBL in Woods Hole, MA, USA
chasemc/teachopencadd
TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data
chasemc/temp3
chasemc/tools
Python package with helper tools for the nf-core community.
chasemc/ZamanianLabDocs
chasemc/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
chasemc/ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)