npPapers

This is a small collection of Natural Products Papers (mostly for introducing undergrads working with me) https://www.ncbi.nlm.nih.gov/books/NBK26866/

Mass Spectrometry

A tutorial in small molecule identification via electrospray ionization-mass spectrometry: The practical art of structural elucidation. Thomas De Vijlder, Dirk Valkenborg, Filip Lemière, Edwin P. Romijn, Kris Laukens, Filip Cuyckens
- https://onlinelibrary.wiley.com/doi/abs/10.1002/mas.21551
Henke MT, Kelleher NL. Modern mass spectrometry for synthetic biology and structure-based discovery of natural products. Natural product reports. 2016;33(8):942-950. doi:10.1039/c6np00024j.
- https://www.ncbi.nlm.nih.gov/pubmed/27376415
Covington BC, McLean JA, Bachmann BO. Comparative mass spectrometry-based metabolomics strategies for the investigation of microbial secondary metabolites. Natural product reports. 2017;34(1):6-24. doi:10.1039/c6np00048g.
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5214543/
Mass spectrometry of natural products: current, emerging and future technologies; Amina Bouslimani, Laura M. Sanchez, Neha Garg, and Pieter C. Dorrestein
- http://pubs.rsc.org/en/content/articlelanding/2014/np/c4np00044g#!divAbstract
- Occurs in a special issue, other articles in the issue are here: http://pubs.rsc.org/en/journals/articlecollectionlanding?themeid=4d49-6d56-14a6-2b79-c1d6-d55f-221c-93b2

Cimermancic P, Medema MH, Claesen J, et al. Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters. Cell. 2014;158(2):412-421. doi:10.1016/j.cell.2014.06.034.
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123684/
Cruz-Morales P, Kopp JF, Martínez-Guerrero C, et al. Phylogenomic Analysis of Natural Products Biosynthetic Gene Clusters Allows Discovery of Arseno-Organic Metabolites in Model Streptomycetes. Genome Biology and Evolution. 2016;8(6):1906-1916. doi:10.1093/gbe/evw125.
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943196/

Omics-based natural product discovery and the lexicon of genome mining Henrique Machado1, Robert N Tuttle, and Paul R Jense; Current Opinion in Microbiology, Volume 39, 2017
- https://www.sciencedirect.com/science/article/pii/S136952741730108X?via%3Dihub
  - Also includes recommended reading
Cracking the regulatory code of biosynthetic gene clusters as a strategy for natural product discovery Sébastien Rigali, Sinaeda Anderssen, Aymeric Naômé, Gilles P. van Wezel; Biochemical Pharmacology, 2018 - https://www.sciencedirect.com/science/article/pii/S0006295218300078#s0010
Recent development of computational resources for new antibiotics discovery Hyun Uk Kim, Kai Blin, Sang Yup Lee, Tilmann Weber; Current Opinion in Microbiology, Volume 39, 2017
- https://www.sciencedirect.com/science/article/pii/S1369527416301989

Coupling MALDI-TOF mass spectrometry protein and specialized metabolite analyses to rapidly discriminate bacterial function. Clark, C. M.; Costa, M. S.; Sanchez, L. M.; Murphy, B. T. 2018. Manuscript under review. Biorxiv Preprint
- https://www.biorxiv.org/content/early/2018/02/05/215350