|'s in SURPI output file names.

[philipmac]

SURPI appears to generate file names using the head line of the fastq/fasta inputs.
If these headers include the | symbol, file names are generated using this. I believe this results in problems.

Excerpt from SURPI.xxxxx.err :

grep: bar.gi|10304415|SRR1145846_1..1e-15.Report: No such file or directory
mv: cannot stat ‘bar.gi|10304415|_SRR1145846_1_1e-15.Report’: No such file or directory

That is, there are files with |'s in the file name, and the script is having problems stating those files.