chiulab/surpi

Issues

• taxdump file from NCBI have been changed

  #37 opened 3 years ago by huangjingchuan12
  0

• How to make surpi db for new NCBI accession2taxid files

  #36 opened 3 years ago by DooYal
  0

• zifn

  #35 opened 4 years ago by advaitb
  0

• Download databases

  #33 opened 6 years ago by 110147
  4

• problem with RAPSearch2

  #34 opened 5 years ago by MaryamZaheri
  0

• surpi on CentOS 6?

  #21 opened 9 years ago by husenzhang
  1

• GI numbers have been deprecated from NCBI database

  #26 opened 8 years ago by raeece
  2

• Error taxonomy_lookup_embeded.pl

  #27 opened 8 years ago by guillaume-gricourt
  5

• fqextract

  #32 opened 8 years ago by ehenrion
  1

• SURPI failure: dependency on 'snap-dev'

  #20 opened 9 years ago by ghbore
  3

• Edit distance in SAM header

  #31 opened 8 years ago by ropolomx
  0

• Cropped reads larger than 75 bp

  #30 opened 8 years ago by ropolomx
  0

• adapters

  #29 opened 8 years ago by bhykes1
  1

• SNAP_FAST_db_dir database error running in comprehensive mode

  #28 opened 8 years ago by bhykes1
  2

• error: no such table: gi_taxid at taxonomy_lookup_embedded.pl line 119

  #25 opened 8 years ago by nooong
  0

• can surpi working on amplicon data?

  #23 opened 9 years ago by ylzheng
  2

• regarding dropcache

  #22 opened 9 years ago by maojn
  0

• Old SNAP version doesn't work with large genomes

  #19 opened 9 years ago by dnieuw
  0

• create_SURPI_data.sh stumbles on pigz

  #18 opened 9 years ago by dnieuw
  2

• AMI run returns no results for 200k reads containing viruses

  #15 opened 9 years ago by bede
  4

• |'s in SURPI output file names.

  #16 opened 9 years ago by philipmac
  0

• SURPI! Dockered: a first attempt

  #13 opened 9 years ago by snewhouse
  0

• Demultiplexing in coverage_generator_bp.sh

  #9 opened 10 years ago by donutbrew
  0

• mlab.load depreciated (coveragePlot.py issue)

  #8 opened 10 years ago by donutbrew
  3

• Repeated errors in "xa*.modheader.cutadapt.summary.log"

  #10 opened 10 years ago by wclee47
  0

• "Can not open the database file" for Comprehensive runs against NR database

  #7 opened 10 years ago by damurdock
  1

• Allow user to select DB directory at command line

  #3 opened 10 years ago by damurdock
  3

• snap can dump core and the error is not caught by SURPI.sh

  #5 opened 10 years ago by terrycojones
  2

• Millions of repeated errors in reads.preprocess.log file

  #4 opened 10 years ago by terrycojones
  5

• FASTQ format warning printed to log file instead of to error file

  #1 opened 10 years ago by terrycojones
  0